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RTP_092018_0_1um_bin_28_55_57_0_85

RTP_092018_0_1um_Hydrogenophilales_63_6
In projects: RTP_092018_0_1um  |  SOB_across_mines

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 301-350 of 594 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_092018_0_1um_scaffold_11438
Order: Hydrogenophilales (60%)
5 5280 bp 63.13 6.45 94.20
RTP_092018_0_1um_scaffold_17202
Order: Hydrogenophilales (55.56%)
9 3731 bp 61.59 7.92 94.24
RTP_092018_0_1um_scaffold_49168
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1649 bp 61.31 6.19 94.24
RTP_092018_0_1um_scaffold_23339
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
4 2919 bp 64.68 6.17 94.24
RTP_092018_0_1um_scaffold_46817
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1712 bp 64.43 4.12 94.28
RTP_092018_0_1um_scaffold_47480
Species: Thiobacillus denitrificans (100%)
3 1692 bp 56.86 8.07 94.33
RTP_092018_0_1um_scaffold_15787
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
4 4003 bp 62.83 7.04 94.35
RTP_092018_0_1um_scaffold_11558
Order: Hydrogenophilales (83.33%)
6 5231 bp 63.66 6.91 94.40
RTP_092018_0_1um_scaffold_29831
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 2414 bp 64.58 6.77 94.45
RTP_092018_0_1um_scaffold_17904
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
5 3610 bp 62.88 5.90 94.49
RTP_092018_0_1um_scaffold_14173
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
8 4365 bp 58.76 6.91 94.57
RTP_092018_0_1um_scaffold_11974
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (60%)
5 5075 bp 62.74 7.03 94.58
RTP_092018_0_1um_scaffold_36866
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 2052 bp 61.84 6.65 94.59
RTP_092018_0_1um_scaffold_35952
Order: Hydrogenophilales (66.67%)
3 2090 bp 63.49 6.24 94.59
RTP_092018_0_1um_scaffold_42479
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1842 bp 65.09 7.00 94.63
RTP_092018_0_1um_scaffold_23894
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (75%)
4 2866 bp 61.48 6.18 94.63
RTP_092018_0_1um_scaffold_23617
Order: Hydrogenophilales (100%)
5 2894 bp 64.72 6.53 94.64
RTP_092018_0_1um_scaffold_24393
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
4 2824 bp 52.41 6.00 94.65
RTP_092018_0_1um_scaffold_24185
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (60%)
5 2842 bp 64.04 7.71 94.69
RTP_092018_0_1um_scaffold_51113
Species: Thiobacillus denitrificans (50%)
2 1600 bp 65.63 6.09 94.69
RTP_092018_0_1um_scaffold_9348
Order: Hydrogenophilales (100%)
7 6342 bp 60.30 6.60 94.70
RTP_092018_0_1um_scaffold_19303
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (80%)
5 3392 bp 65.27 7.61 94.72
RTP_092018_0_1um_scaffold_10784
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (71.43%)
7 5593 bp 64.12 5.12 94.73
RTP_092018_0_1um_scaffold_16796
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (60%)
5 3812 bp 63.41 6.06 94.75
RTP_092018_0_1um_scaffold_12307
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
6 4943 bp 65.12 6.95 94.80
RTP_092018_0_1um_scaffold_14506
Order: Burkholderiales (66.67%)
3 4283 bp 66.89 6.20 94.84
RTP_092018_0_1um_scaffold_18535
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 3509 bp 63.86 7.14 94.90
RTP_092018_0_1um_scaffold_14199
Species: GWE1_Thiobacillus_62_9_curated (50%)
4 4358 bp 63.29 7.16 94.93
RTP_092018_0_1um_scaffold_17536
Order: Hydrogenophilales (100%)
6 3673 bp 59.13 6.29 94.99
RTP_092018_0_1um_scaffold_31013
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (75%)
4 2342 bp 64.13 6.28 95.05
RTP_092018_0_1um_scaffold_31521
Species: Thiobacillus denitrificans (50%)
2 2313 bp 59.92 5.84 95.07
RTP_092018_0_1um_scaffold_11748
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (83.33%)
6 5165 bp 63.25 6.21 95.08
RTP_092018_0_1um_scaffold_17694
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (57.14%)
7 3644 bp 62.32 7.70 95.17
RTP_092018_0_1um_scaffold_34576
Species: GWE1_Thiobacillus_62_9_curated (100%)
3 2156 bp 63.68 5.01 95.18
RTP_092018_0_1um_scaffold_15429
Class: Gammaproteobacteria (50%)
8 4078 bp 63.90 6.25 95.19
RTP_092018_0_1um_scaffold_33056
Order: Hydrogenophilales (100%)
3 2230 bp 62.56 6.12 95.25
RTP_092018_0_1um_scaffold_27494
Species: Thiobacillus denitrificans (75%)
4 2573 bp 70.23 7.23 95.26
RTP_092018_0_1um_scaffold_15600
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
4 4040 bp 62.25 6.50 95.27
RTP_092018_0_1um_scaffold_39526
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
4 1946 bp 65.11 6.86 95.27
RTP_092018_0_1um_scaffold_32508
Species: GWE1_Thiobacillus_62_9_curated (50%)
4 2257 bp 61.59 7.64 95.30
RTP_092018_0_1um_scaffold_54095
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 1536 bp 67.45 4.69 95.31
RTP_092018_0_1um_scaffold_15392
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (60%)
5 4087 bp 65.43 6.90 95.35
RTP_092018_0_1um_scaffold_41991
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
4 1859 bp 63.64 5.41 95.37
RTP_092018_0_1um_scaffold_27683
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
4 2557 bp 64.10 5.63 95.39
RTP_092018_0_1um_scaffold_16383
Order: Hydrogenophilales (66.67%)
6 3886 bp 64.44 5.44 95.42
RTP_092018_0_1um_scaffold_43146
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 1820 bp 64.89 6.35 95.44
RTP_092018_0_1um_scaffold_10336
Order: Hydrogenophilales (85.71%)
7 5791 bp 64.41 5.91 95.48
RTP_092018_0_1um_scaffold_31755
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 2299 bp 64.85 6.79 95.52
RTP_092018_0_1um_scaffold_13025
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (75%)
4 4695 bp 65.39 5.81 95.53
RTP_092018_0_1um_scaffold_19825
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (75%)
4 3313 bp 63.18 8.29 95.53
Displaying items 301-350 of 594 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.