ggKbase home page

RTP_092018_0_1um_bin_28_55_57_0_85

RTP_092018_0_1um_Hydrogenophilales_63_6
In projects: RTP_092018_0_1um  |  SOB_across_mines

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 1-50 of 594 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_092018_0_1um_scaffold_5108
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (53.33%)
15 11565 bp 63.90 6.77 90.97
RTP_092018_0_1um_scaffold_6472
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (75%)
8 9092 bp 63.44 6.42 96.74
RTP_092018_0_1um_scaffold_6566
Order: Hydrogenophilales (91.67%)
12 8939 bp 64.79 6.83 91.35
RTP_092018_0_1um_scaffold_6827
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (81.82%)
11 8613 bp 64.46 6.39 96.03
RTP_092018_0_1um_scaffold_6862
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (70%)
10 8568 bp 59.68 6.11 80.22
RTP_092018_0_1um_scaffold_7009
Phylum: Proteobacteria (75%)
12 8392 bp 60.14 5.77 84.08
RTP_092018_0_1um_scaffold_7325
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (75%)
8 8005 bp 58.51 6.15 88.63
RTP_092018_0_1um_scaffold_7470
Order: Hydrogenophilales (83.33%)
6 7853 bp 61.71 6.36 93.71
RTP_092018_0_1um_scaffold_7555
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (72.73%)
11 7751 bp 63.20 6.97 89.79
RTP_092018_0_1um_scaffold_7920
Order: Hydrogenophilales (85.71%)
7 7421 bp 64.44 6.87 89.26
RTP_092018_0_1um_scaffold_8009
Order: Hydrogenophilales (100%)
12 7346 bp 59.64 7.70 91.27
RTP_092018_0_1um_scaffold_8064
Order: Hydrogenophilales (88.89%)
9 7291 bp 62.91 5.33 92.62
RTP_092018_0_1um_scaffold_8119
Order: Hydrogenophilales (100%)
7 7251 bp 64.92 7.05 99.67
RTP_092018_0_1um_scaffold_8363
Order: Hydrogenophilales (58.33%)
12 7034 bp 61.06 6.46 77.84
RTP_092018_0_1um_scaffold_8374
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (83.33%)
6 7027 bp 63.37 6.15 78.30
RTP_092018_0_1um_scaffold_8616
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
9 6847 bp 65.36 6.27 85.35
RTP_092018_0_1um_scaffold_8647
Class: Betaproteobacteria (90%)
10 6830 bp 60.45 6.59 92.81
RTP_092018_0_1um_scaffold_8815
Order: Hydrogenophilales (88.89%)
9 6704 bp 62.74 7.27 89.72
RTP_092018_0_1um_scaffold_9058
Species: uncultured beta proteobacterium (55.56%)
9 6531 bp 63.62 8.11 99.49
RTP_092018_0_1um_scaffold_9076
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (54.55%)
11 6521 bp 66.19 4.46 95.83
RTP_092018_0_1um_scaffold_9313
Order: Hydrogenophilales (77.78%)
9 6369 bp 63.50 6.38 85.82
RTP_092018_0_1um_scaffold_9323
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (71.43%)
7 6362 bp 61.35 5.52 83.61
RTP_092018_0_1um_scaffold_9348
Order: Hydrogenophilales (100%)
7 6342 bp 60.30 6.60 94.70
RTP_092018_0_1um_scaffold_9639
Order: Hydrogenophilales (55.56%)
9 6169 bp 64.37 4.86 95.66
RTP_092018_0_1um_scaffold_9747
Class: Betaproteobacteria (88.89%)
9 6103 bp 62.23 6.96 80.04
RTP_092018_0_1um_scaffold_10129
Class: Gammaproteobacteria (50%)
10 5904 bp 60.23 4.27 90.96
RTP_092018_0_1um_scaffold_10186
Order: Hydrogenophilales (66.67%)
3 5876 bp 58.54 4.57 86.39
RTP_092018_0_1um_scaffold_10230
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (75%)
4 5851 bp 61.29 6.43 90.70
RTP_092018_0_1um_scaffold_10307
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (60%)
10 5808 bp 58.30 6.33 83.11
RTP_092018_0_1um_scaffold_10336
Order: Hydrogenophilales (85.71%)
7 5791 bp 64.41 5.91 95.48
RTP_092018_0_1um_scaffold_10393
Order: Hydrogenophilales (100%)
10 5766 bp 61.24 7.88 93.24
RTP_092018_0_1um_scaffold_10474
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (87.5%)
8 5729 bp 61.18 6.60 87.92
RTP_092018_0_1um_scaffold_10784
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (71.43%)
7 5593 bp 64.12 5.12 94.73
RTP_092018_0_1um_scaffold_10926
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (83.33%)
6 5518 bp 59.88 6.69 89.98
RTP_092018_0_1um_scaffold_10927
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
6 5518 bp 62.05 5.74 87.53
RTP_092018_0_1um_scaffold_10960
Phylum: Proteobacteria (66.67%)
3 5501 bp 63.79 6.11 78.80
RTP_092018_0_1um_scaffold_10970
Species: GWE1_Thiobacillus_62_9_curated (50%)
8 5494 bp 65.16 7.67 86.66
RTP_092018_0_1um_scaffold_11225
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
6 5375 bp 64.39 6.59 97.28
RTP_092018_0_1um_scaffold_11286
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 5351 bp 64.29 6.53 93.12
RTP_092018_0_1um_scaffold_11438
Order: Hydrogenophilales (60%)
5 5280 bp 63.13 6.45 94.20
RTP_092018_0_1um_scaffold_11472
Species: GWE1_Thiobacillus_62_9_curated (50%)
6 5270 bp 59.26 7.49 92.90
RTP_092018_0_1um_scaffold_11549
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (77.78%)
9 5233 bp 62.11 6.36 90.69
RTP_092018_0_1um_scaffold_11558
Order: Hydrogenophilales (83.33%)
6 5231 bp 63.66 6.91 94.40
RTP_092018_0_1um_scaffold_11559
Order: Hydrogenophilales (60%)
5 5231 bp 60.79 6.14 94.00
RTP_092018_0_1um_scaffold_11602
Species: Thiobacillus denitrificans (54.55%)
11 5218 bp 63.28 5.72 85.32
RTP_092018_0_1um_scaffold_11605
Order: Hydrogenophilales (77.78%)
9 5217 bp 63.43 6.24 82.92
RTP_092018_0_1um_scaffold_11618
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (57.14%)
7 5214 bp 59.93 4.98 75.66
RTP_092018_0_1um_scaffold_11719
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (57.14%)
7 5177 bp 63.57 6.81 88.84
RTP_092018_0_1um_scaffold_11742
Order: Hydrogenophilales (85.71%)
7 5167 bp 61.80 5.66 92.55
RTP_092018_0_1um_scaffold_11748
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (83.33%)
6 5165 bp 63.25 6.21 95.08
Displaying items 1-50 of 594 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.