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RTP_092018_0_1um_scaffold_262

Search features with annotation key words

Displaying items 1-30 of 168 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_092018_0_1um_scaffold_262_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

275..868
DNA (594bp) protein (198aa)
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Thiobacillus thioparus RepID=UPI00037F0768
5-formyltetrahydrofolate cyclo-ligase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_262_2
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(958..2421)
DNA (1464bp) protein (488aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
Histidine kinase n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BTZ5_DELAS
histidine kinase
RTP_092018_0_1um_scaffold_262_3
Serratia plymuthica, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2402..3136)
DNA (735bp) protein (245aa)
PhoB family transcriptional regulator n=2 Tax=Serratia plymuthica RepID=S4YLN5_SERPL
PhoB family transcriptional regulator
PhoB family transcriptional regulator {ECO:0000313|EMBL:AGP43703.1}; TaxID=1348660 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia plymuthica S13.;"
RTP_092018_0_1um_scaffold_262_4
Leptolyngbya sp. Heron Island J, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

3597..4391
DNA (795bp) protein (265aa)
Chrd domain-containing protein n=1 Tax=Leptolyngbya sp. Heron Island J RepID=U9VY49_9CYAN
Chrd domain-containing protein {ECO:0000313|EMBL:ESA37589.1}; TaxID=1385935 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. Heron Island J.;"
CHRD domain-containing protein
RTP_092018_0_1um_scaffold_262_5
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4571..5023
DNA (453bp) protein (151aa)
Camphor resistance protein CrcB {ECO:0000313|EMBL:EXI85129.1}; Flags: Precursor;; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
Putative uncharacterized protein id=1320593 bin=GWE1_T_denit_62_9 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
RTP_092018_0_1um_scaffold_262_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5120..6952
DNA (1833bp) protein (611aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035D3E26
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_262_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7042..8094
DNA (1053bp) protein (351aa)
Putative uncharacterized protein id=1328059 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_262_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8186..9451)
DNA (1266bp) protein (422aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000363A7A3
peptidase U32
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_262_trna_2
unknown

Not on your lists

comp(9639..9711)
DNA (73bp)
transferRNA Thr
RTP_092018_0_1um_scaffold_262_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9745..11148)
DNA (1404bp) protein (468aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
glutamyl-tRNA synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI0003823A79
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_262_trna_1
unknown

Not on your lists

11243..11320
DNA (78bp)
transferRNA Val
RTP_092018_0_1um_scaffold_262_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11483..12931
DNA (1449bp) protein (483aa)
RNA helicase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037397DB
DEAD/DEAH box helicase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_262_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13002..19064)
DNA (6063bp) protein (2021aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035DBE96
signal transduction histidine kinase CheA-like protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_262_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19135..21249)
DNA (2115bp) protein (705aa)
Chemotaxis sensory transducer n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFV4_THIDA
chemotaxis sensory transducer
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_262_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21321..21830)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037400FD
chemotaxis protein CheW
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_262_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21841..22206)
DNA (366bp) protein (122aa)
chemotaxis protein CheY n=1 Tax=Thiobacillus thioparus RepID=UPI0003600469
response regulator receiver domain-containing protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_092018_0_1um_scaffold_262_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22229..22621)
DNA (393bp) protein (131aa)
Response regulator receiver domain protein (CheY) id=1346776 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
response regulator receiver domain-containing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_262_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22798..23700)
DNA (903bp) protein (301aa)
hypothetical protein id=12495276 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_262_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23859..24041)
DNA (183bp) protein (61aa)
rubredoxin n=1 Tax=Thiobacillus denitrificans RepID=UPI00036E61EC
Rubredoxin
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_262_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24096..24938
DNA (843bp) protein (281aa)
phosphomethylpyrimidine kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI000360B1CB
phosphomethylpyrimidine kinase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_262_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24935..25582
DNA (648bp) protein (216aa)
thiamine monophosphate synthase (EC:2.5.1.3)
Thiamine-phosphate synthase id=1346772 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_262_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25593..26870
DNA (1278bp) protein (426aa)
glutamate-1-semialdehyde aminotransferase (EC:5.4.3.8)
glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Thiobacillus thioparus RepID=UPI00037F6131
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_262_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26886..27524)
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037F219C
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_262_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27570..28616)
DNA (1047bp) protein (349aa)
cytochrome C n=1 Tax=Thiobacillus thioparus RepID=UPI00036AE71A
cytochrome c
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_262_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28756..29820
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037E9F0D
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_262_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29965..31041
DNA (1077bp) protein (359aa)
Conserved hypothetical secreted protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K1L6_AZOSB
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_262_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31043..33367)
DNA (2325bp) protein (775aa)
thiol:disulfide interchange protein DsbD (EC:1.8.1.8)
thiol:disulfide interchange protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036533EC
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_262_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33360..33683)
DNA (324bp) protein (108aa)
Divalent cation tolerance protein id=1343288 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
divalent cation tolerance protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_262_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33687..34094
DNA (408bp) protein (136aa)
FxsA protein id=1343289 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
FxsA protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_262_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34231..35619
DNA (1389bp) protein (463aa)
glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase (EC:2.3.1.157 2.7.7.23)
glucosamine-1-phosphate N-acetyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003614CFE
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 168 in total

View Taxonomy