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RTP_092018_0_1um_scaffold_386

Search features with annotation key words

Displaying items 1-30 of 151 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_092018_0_1um_scaffold_386_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..399
DNA (399bp) protein (133aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase id=1329920 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_386_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

401..841
DNA (441bp) protein (147aa)
nitrogen utilization protein B n=1 Tax=Thiobacillus denitrificans RepID=UPI00036E3448
NusB antitermination factor
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_386_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

903..1856
DNA (954bp) protein (318aa)
thiamine-monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
thiamine monophosphate kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI000365663B
RTP_092018_0_1um_scaffold_386_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1837..2325
DNA (489bp) protein (163aa)
phosphatidylglycerophosphatase (EC:3.1.3.27)
Phosphatidylglycerophosphatase A id=1371379 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_386_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2313..2810
DNA (498bp) protein (166aa)
CinA protein id=1371378 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
CinA protein
CinA protein {ECO:0000313|EMBL:AAZ98148.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_092018_0_1um_scaffold_386_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2879..3790)
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003780B4D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98149.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_092018_0_1um_scaffold_386_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3953..4990
DNA (1038bp) protein (346aa)
Protein RecA id=1371376 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
recA; recombinase A
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_092018_0_1um_scaffold_386_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4983..5447
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000362BB10
regulatory protein RecX
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_386_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5553..6221
DNA (669bp) protein (223aa)
HflBKC-binding inner membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035CACED
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_386_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6228..7055
DNA (828bp) protein (276aa)
DNAase n=1 Tax=Thiobacillus thioparus RepID=UPI00037523B5
TatD related DNase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_386_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7039..7509)
DNA (471bp) protein (157aa)
hypothetical protein id=12497805 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_386_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7602..8216)
DNA (615bp) protein (205aa)
Putative uncharacterized protein id=1342783 bin=GWE1_T_denit_62_9 species=uncultured beta proteobacterium genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_386_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8213..8857)
DNA (645bp) protein (215aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase id=1342782 bin=GWE1_T_denit_62_9 species=uncultured beta proteobacterium genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_386_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8850..9638)
DNA (789bp) protein (263aa)
dienelactone hydrolase n=1 Tax=Thiobacillus denitrificans RepID=UPI000364FE7D
dienelactone hydrolase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_386_15
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9741..10463
DNA (723bp) protein (241aa)
S4 domain protein n=1 Tax=uncultured beta proteobacterium RepID=Q2Z096_9PROT
S4 domain protein {ECO:0000313|EMBL:CAI78504.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
RNA-binding S4 domain-containing protein
RTP_092018_0_1um_scaffold_386_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10493..11323)
DNA (831bp) protein (277aa)
Putative uncharacterized protein id=1349294 bin=GWE1_T_denit_62_9 species=Azospira oryzae genus=Azospira taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_386_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11434..12417)
DNA (984bp) protein (328aa)
Putative NAD/FAD-dependent oxidoreductase id=1319190 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
NAD/FAD-dependent oxidoreductase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_386_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12532..12969)
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035FAFAA
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_386_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12972..14261)
DNA (1290bp) protein (430aa)
Putative integral membrane protein id=1319192 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
integral membrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_386_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14470..15384
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037152EB
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_386_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15381..15926
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003821AC0
twin-arginine translocation pathway signal
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_386_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16068..16424
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GHB1_NITSI
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_386_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16542..17726
DNA (1185bp) protein (395aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIV4_THIDA
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_386_24
unknown

Not on your lists

17742..18401
DNA (660bp) protein (220aa)

This feature has no annotations

RTP_092018_0_1um_scaffold_386_25
marine gamma proteobacterium HTCC2080, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18398..19096
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z0M7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EAW42199.1}; TaxID=247639 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2080.;"
hypothetical protein
RTP_092018_0_1um_scaffold_386_26
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19076..19636)
DNA (561bp) protein (187aa)
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
RTP_092018_0_1um_scaffold_386_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19847..20449)
DNA (603bp) protein (201aa)
SOS-response transcriptional repressor, LexA (EC:3.4.21.88)
LexA repressor id=1324497 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_386_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20570..20824
DNA (255bp) protein (85aa)
hypothetical protein id=1324498 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_386_29
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21313..23061
DNA (1749bp) protein (583aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AIJ9_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN36066.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_092018_0_1um_scaffold_386_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23230..24066)
DNA (837bp) protein (279aa)
Restriction endonuclease id=1324503 bin=GWE1_T_denit_62_9 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
restriction endonuclease
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 151 in total

View Taxonomy