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RTP_092018_0_1um_scaffold_453

Search features with annotation key words

Displaying items 1-30 of 123 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_092018_0_1um_scaffold_453_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..799
DNA (798bp) protein (266aa)
60 kDa chaperonin id=1367068 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
molecular chaperone GroEL
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_453_2
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

969..1610
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036B2584
Exonuclease {ECO:0000313|EMBL:GAO36423.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
exonuclease
RTP_092018_0_1um_scaffold_453_3
GWA2_Gallionellales_59_43_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1674..3716)
DNA (2043bp) protein (681aa)
hypothetical protein n=6 Tax=Proteobacteria RepID=UPI00037E7A37
sodium solute transporter superfamily protein
Tax=GWA2_Gallionellales_59_43_curated
RTP_092018_0_1um_scaffold_453_4
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3713..4039)
DNA (327bp) protein (109aa)
hypothetical protein id=12494899 bin=THIO_HI species=Thiothrix disciformis genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
RTP_092018_0_1um_scaffold_453_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4183..6078)
DNA (1896bp) protein (632aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003820939
CBS signal-transduction protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_453_trna_1
unknown

Not on your lists

6224..6296
DNA (73bp)
transferRNA Phe
RTP_092018_0_1um_scaffold_453_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6695..8902)
DNA (2208bp) protein (736aa)
diguanylate cyclase n=1 Tax=Thiobacillus thioparus RepID=UPI000381D3BA
response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_453_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8927..10843)
DNA (1917bp) protein (639aa)
histidine kinase (EC:2.7.3.-)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003655789
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_092018_0_1um_scaffold_453_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11092..12063
DNA (972bp) protein (324aa)
D-alanyl-D-alanine carboxypeptidase-like protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SMK9_THIDA
D-alanyl-D-alanine carboxypeptidase-like protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_453_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12148..13104
DNA (957bp) protein (319aa)
Putative uncharacterized protein id=1371499 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_453_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13101..13979
DNA (879bp) protein (293aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60)
tartronate semialdehyde reductase n=1 Tax=Thiobacillus thioparus RepID=UPI00035CEDA4
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_453_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13992..14351
DNA (360bp) protein (120aa)
hypothetical protein id=12497673 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_453_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14768..15340
DNA (573bp) protein (191aa)
YceI n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q479L6_DECAR
YceI
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_453_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15422..16879
DNA (1458bp) protein (486aa)
gabD1; succinate-semialdehyde dehydrogenase (NADP+) (EC:1.2.1.16)
Putative succinic semialdehyde dehydrogenase id=1371503 bin=GWE1_T_denit_62_9 species=Azoarcus anaerobius genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_453_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16905..17816
DNA (912bp) protein (304aa)
arginase (EC:3.5.3.1)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000372D819
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_092018_0_1um_scaffold_453_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18196..18975)
DNA (780bp) protein (260aa)
rho; transcription termination factor Rho; K03628 transcription termination factor Rho id=12496042 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
rho; transcription termination factor Rho
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_453_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18972..19421)
DNA (450bp) protein (150aa)
Transcription termination factor Rho id=1350670 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rho; transcription termination factor Rho
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_453_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19600..19926)
DNA (327bp) protein (109aa)
thioredoxin
Thioredoxin id=1350671 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_453_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20098..20421
DNA (324bp) protein (108aa)
ferredoxin n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B00A9
7Fe ferredoxin
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_453_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20427..23165
DNA (2739bp) protein (913aa)
DNA helicase/exodeoxyribonuclease V subunit B (EC:3.1.11.5)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000381B286
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_453_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23159..24310)
DNA (1152bp) protein (384aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037D4D84
extracellular ligand-binding receptor
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_453_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24446..24766)
DNA (321bp) protein (107aa)
Probable cytochrome C transmembrane protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFD3_THIDA
cytochrome C transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_453_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24888..25676)
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003617475
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_453_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25770..27788)
DNA (2019bp) protein (673aa)
thioredoxin n=1 Tax=Thiobacillus thioparus RepID=UPI0003622CE7
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_453_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27877..28455
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000369B00C
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_092018_0_1um_scaffold_453_25
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28495..29724)
DNA (1230bp) protein (410aa)
Putative uncharacterized protein n=2 Tax=sulfur-oxidizing symbionts RepID=G2DFJ7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EGV50613.1}; TaxID=1048808 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Riftia pachyptila (vent Ph05).;"
putative exported protein
RTP_092018_0_1um_scaffold_453_26
Thiolapillus brandeum, Thiolapillus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29775..30557)
DNA (783bp) protein (261aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BSE3_9GAMM
conserved hypothetical protein
Thiolapillus brandeum DNA, complete genome {ECO:0000313|EMBL:BAO44502.1}; TaxID=1076588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiolapillus.;" source="Thiolapillus brandeum.;"
RTP_092018_0_1um_scaffold_453_27
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30550..32838)
DNA (2289bp) protein (763aa)
Putative uncharacterized protein n=1 Tax=endosymbiont of Riftia pachyptila (vent Ph05) RepID=G2DFM8_9GAMM
RND transporter {ECO:0000313|EMBL:KHD12889.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
hypothetical protein
RTP_092018_0_1um_scaffold_453_28
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32857..34602)
DNA (1746bp) protein (582aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BRE6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EDN70891.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
5'-nucleotidase/2' 3'-cyclic phosphodiesterase
RTP_092018_0_1um_scaffold_453_29
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34615..35046)
DNA (432bp) protein (144aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BRE8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EDN70893.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
hypothetical protein
Displaying items 1-30 of 123 in total

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