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RTP_092018_0_1um_scaffold_796

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Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_092018_0_1um_scaffold_796_1

Not on your lists

comp(126..548)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DGV6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD97262.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
transposase
RTP_092018_0_1um_scaffold_796_2
Xylella fastidiosa, Xylella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1517..1783
DNA (267bp) protein (89aa)
Uncharacterized protein n=3 Tax=Xylella fastidiosa RepID=Q9PD18_XYLFA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETE31405.1}; TaxID=1214121 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella.;" source="Xylella fastidiosa 32.;"
RTP_092018_0_1um_scaffold_796_3
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1770..2108
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X2J5_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG31328.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
RTP_092018_0_1um_scaffold_796_4
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2655..2897
DNA (243bp) protein (81aa)
Prevent-host-death protein n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NW41_9GAMM
Prevent-host-death protein
Prevent-host-death protein {ECO:0000313|EMBL:AIA54924.1}; TaxID=637389 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus ATCC 51756.;"
RTP_092018_0_1um_scaffold_796_5

Not on your lists

2894..3310
DNA (417bp) protein (139aa)
Protein containing PilT protein n=1 Tax=mine drainage metagenome RepID=T1CVE2_9ZZZZ
Protein containing PilT protein {ECO:0000313|EMBL:EQD73905.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_092018_0_1um_scaffold_796_6
Gallionella capsiferriformans, Gallionella, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3523..3789)
DNA (267bp) protein (89aa)
Addiction module toxin, Txe/YoeB family n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SFA3_GALCS
Txe/YoeB family addiction module toxin
Addiction module toxin, Txe/YoeB family {ECO:0000313|EMBL:ADL55200.1}; TaxID=395494 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Gallionella.;" source="Gallionella capsiferriformans (strain ES-2) (Gallionella ferruginea; capsiferriformans (strain ES-2)).;"
RTP_092018_0_1um_scaffold_796_7
CG_Gallio_01, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3789..4049)
DNA (261bp) protein (87aa)
prevent-host-death protein n=1 Tax=Methylomicrobium buryatense RepID=UPI00034620F0
prevent-host-death family protein
Tax=CG_Gallio_01
RTP_092018_0_1um_scaffold_796_trna_1
unknown

Not on your lists

comp(4702..4774)
DNA (73bp)
transferRNA Lys
RTP_092018_0_1um_scaffold_796_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4913..6091)
DNA (1179bp) protein (393aa)
Probable transmembrane protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGT9_THIDA
transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_796_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6423..7103)
DNA (681bp) protein (227aa)
7-cyano-7-deazaguanine synthase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=QUEC_THIDA
ExsB ATPase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_796_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7100..7750)
DNA (651bp) protein (217aa)
radical activating enzyme; K10026 queuosine biosynthesis protein QueE id=12494368 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
radical activating enzyme
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_796_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7753..8499)
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003610CBD
TPR repeat-containing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_796_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8533..9108)
DNA (576bp) protein (192aa)
Outer membrane protein, porin-associated lipoprotein id=1336258 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
outer membrane protein, porin-associated lipoprotein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_796_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9151..10425)
DNA (1275bp) protein (425aa)
translocation protein TolB n=1 Tax=Thiobacillus denitrificans RepID=UPI0003779B92
tolB; translocation protein TolB
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_796_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10494..11360)
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003740A7C
TonB protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_796_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11357..11767)
DNA (411bp) protein (137aa)
biopolymer transport protein ExbD/TolR; K03560 biopolymer transport protein TolR id=12496614 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
biopolymer transport protein ExbD/TolR
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_796_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11771..12463)
DNA (693bp) protein (231aa)
protein tolQ n=1 Tax=Thiobacillus denitrificans RepID=UPI0003707686
MotA/TolQ/ExbB proton channel family protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_796_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12460..12876)
DNA (417bp) protein (139aa)
4-hydroxybenzoyl-CoA thioesterase id=1336263 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
4-hydroxybenzoyl-CoA thioesterase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_796_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12879..13904)
DNA (1026bp) protein (342aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4)
Holliday junction DNA helicase RuvB n=1 Tax=Thiobacillus denitrificans RepID=UPI000360A38E
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_796_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13944..15449)
DNA (1506bp) protein (502aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003676186
diguanylate cyclase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_796_20
unknown

Not on your lists

comp(15452..15640)
DNA (189bp) protein (63aa)

This feature has no annotations

RTP_092018_0_1um_scaffold_796_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15650..17050)
DNA (1401bp) protein (467aa)
diguanylate cyclase id=12496610 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
diguanylate cyclase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_796_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17122..17697)
DNA (576bp) protein (192aa)
Holliday junction DNA helicase RuvA n=1 Tax=Thiobacillus denitrificans RepID=UPI000378BE3C
DNA recombination protein, RuvA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_796_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17711..18235)
DNA (525bp) protein (175aa)
Crossover junction endodeoxyribonuclease RuvC id=1336268 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ruvC; Holliday junction resolvase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_796_24
Acaryochloris marina, Acaryochloris, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(18232..18651)
DNA (420bp) protein (140aa)
twitching motility protein PilT n=1 Tax=Acaryochloris sp. CCMEE 5410 RepID=UPI000248505A
PilT domain-containing protein
PIN domain protein {ECO:0000313|EMBL:ABW31643.1}; TaxID=329726 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Acaryochloris.;" source="Acaryochloris marina (strain MBIC 11017).;"
RTP_092018_0_1um_scaffold_796_25
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18644..18868)
DNA (225bp) protein (75aa)
Prevent-host-death family protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C1F7_NITHN
prevent-host-death family protein
Prevent-host-death family protein {ECO:0000313|EMBL:ADE16509.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
RTP_092018_0_1um_scaffold_796_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18917..19648)
DNA (732bp) protein (244aa)
transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B6279
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_796_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19670..19915
DNA (246bp) protein (82aa)
N-acetylglucosamine kinase (EC:2.7.1.59); K00884 N-acetylglucosamine kinase [EC:2.7.1.59] id=12496606 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
N-acetylglucosamine kinase (EC:2.7.1.59)
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_092018_0_1um_scaffold_796_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19915..20682
DNA (768bp) protein (256aa)
N-acetylglucosamine kinase (EC:2.7.1.59); K00884 N-acetylglucosamine kinase [EC:2.7.1.59] id=12494357 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
N-acetylglucosamine kinase (EC:2.7.1.59)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_796_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20920..21360
DNA (441bp) protein (147aa)
phosphoribosyl transferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E408F
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 74 in total

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