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RTP_092018_0_1um_scaffold_1152

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_092018_0_1um_scaffold_1152_1
unknown

Not on your lists

comp(3..95)
DNA (93bp) protein (31aa)

This feature has no annotations

RTP_092018_0_1um_scaffold_1152_2
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

404..1183
DNA (780bp) protein (260aa)
biotin--acetyl-CoA-carboxylase ligase (EC:6.3.4.15)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000367D1D4
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
RTP_092018_0_1um_scaffold_1152_3
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1180..1914
DNA (735bp) protein (245aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036E738C
transcriptional acitvator, Baf
RTP_092018_0_1um_scaffold_1152_4
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1911..2567
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D4AD2
Putative uncharacterized protein {ECO:0000313|EMBL:CAI78482.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
hypothetical protein
RTP_092018_0_1um_scaffold_1152_5
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2562..3431)
DNA (870bp) protein (290aa)
4-hydroxybenzoate octaprenyltransferase {ECO:0000256|SAAS:SAAS00210629}; EC=2.5.1.- {ECO:0000256|SAAS:SAAS00272707};; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
4-hydroxybenzoate octaprenyltransferase (EC:2.5.1.-)
4-hydroxybenzoate octaprenyltransferase n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0B7_9PROT
RTP_092018_0_1um_scaffold_1152_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3428..3991)
DNA (564bp) protein (188aa)
chorismate lyase (EC:4.1.3.-)
Probable chorismate pyruvate-lyase {ECO:0000255|HAMAP-Rule:MF_01632}; Short=CL {ECO:0000255|HAMAP-Rule:MF_01632};; Short=CPL {ECO:0000255|HAMAP-Rule:MF_01632};; EC=4.1.3.40 {ECO:0000255|HAMAP-Rule:MF_01632};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Probable chorismate pyruvate-lyase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=UBIC_THIDA
RTP_092018_0_1um_scaffold_1152_7
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4088..4948
DNA (861bp) protein (287aa)
Putative uncharacterized protein n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0B5_9PROT
Putative uncharacterized protein {ECO:0000313|EMBL:CAI78485.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
hypothetical protein
RTP_092018_0_1um_scaffold_1152_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4948..5970
DNA (1023bp) protein (341aa)
TRAP-type C4-dicarboxylate transport system,large permase component n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0B4_9PROT
periplasmic C4-dicarboxylate binding protein DctP
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1152_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5967..6467
DNA (501bp) protein (167aa)
Putative uncharacterized protein n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0B3_9PROT
ABC transporter permease
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1152_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6464..7747
DNA (1284bp) protein (428aa)
TRAP dicarboxylate transporter, DctM subunit n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLI9_THIDA
TRAP dicarboxylate transporter subunit DctM
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1152_11
unknown

Not on your lists

7758..8096
DNA (339bp) protein (113aa)

This feature has no annotations

RTP_092018_0_1um_scaffold_1152_12
unknown

Not on your lists

8399..8989
DNA (591bp) protein (197aa)

This feature has no annotations

RTP_092018_0_1um_scaffold_1152_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9714..11753)
DNA (2040bp) protein (680aa)
ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase RecG n=1 Tax=Thiobacillus denitrificans RepID=UPI00037AE24D
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_092018_0_1um_scaffold_1152_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11762..12139)
DNA (378bp) protein (126aa)
Putative translation initiation inhibitor id=1342766 bin=GWE1_T_denit_62_9 species=uncultured beta proteobacterium genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
endoribonuclease L-PSP
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_1152_15
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12303..12593
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Enterovibrio norvegicus RepID=UPI0002F6511E
Uncharacterized protein {ECO:0000313|EMBL:EDM83200.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED105.;"
hypothetical protein
RTP_092018_0_1um_scaffold_1152_16
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12679..13518
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Methyloversatilis universalis RepID=UPI00037D576E
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_092018_0_1um_scaffold_1152_17
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13515..14300
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Methyloversatilis sp. NVD RepID=UPI00037ABF30
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_092018_0_1um_scaffold_1152_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14313..16511)
DNA (2199bp) protein (733aa)
metal dependent phosphohydrolase (EC:2.7.6.5)
guanosine-3'''',5''''-bis(diphosphate) 3''''-pyrophosphohydrolase n=1 Tax=Thiobacillus thioparus RepID=UPI00037CDB3A
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1152_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16504..16707)
DNA (204bp) protein (68aa)
DNA-directed RNA polymerase subunit omega n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0A8_9PROT
RNA polymerase, omega subunit
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1152_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16805..17434)
DNA (630bp) protein (210aa)
guanylate kinase (EC:2.7.4.8)
guanylate kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00036CFB1E
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1152_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17463..18329)
DNA (867bp) protein (289aa)
Putative uncharacterized protein n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0A6_9PROT
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1152_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18430..19374
DNA (945bp) protein (315aa)
Putative uncharacterized protein n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0A5_9PROT
Serine/threonine protein kinase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1152_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19385..20293
DNA (909bp) protein (303aa)
Serine/threonine protein phosphatase n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0A4_9PROT
Ser/Thr phosphatase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1152_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20367..21095
DNA (729bp) protein (243aa)
RNAse PH (EC:2.7.7.56)
Ribonuclease PH n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0A3_9PROT
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1152_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


21092..21682
DNA (591bp) protein (197aa)
Non-canonical purine NTP pyrophosphatase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLH9_THIDA
deoxyribonucleotide triphosphate pyrophosphatase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1152_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21675..22850
DNA (1176bp) protein (392aa)
coproporphyrinogen III oxidase (EC:1.3.99.22)
Coproporphyrinoben III oxidase and related Fe-S oxidoreductase n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0A1_9PROT
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1152_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22847..24007)
DNA (1161bp) protein (387aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003767800
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1152_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24070..25140
DNA (1071bp) protein (357aa)
selenophosphate synthetase (EC:2.7.9.3)
segregation protein A n=1 Tax=Thiobacillus thioparus RepID=UPI000372E793
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1152_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25141..26082
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A3E06
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1152_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26745..30449)
DNA (3705bp) protein (1235aa)
Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain id=1320901 bin=GWE1_T_denit_62_9 species=Hahella chejuensis genus=Hahella taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
signal transduction protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 52 in total

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