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RTP_092018_0_1um_scaffold_1748

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_092018_0_1um_scaffold_1748_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..113)
DNA (111bp) protein (37aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RISB_THIDA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1748_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(130..1215)
DNA (1086bp) protein (362aa)
bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein (EC:3.5.4.25 4.1.2.-)
3,4-dihydroxy-2-butanone 4-phosphate synthase id=1329921 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1748_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1215..1820)
DNA (606bp) protein (202aa)
riboflavin synthase subunit alpha (EC:2.5.1.9)
Lumazine-binding protein id=1329922 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1748_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2024..2722
DNA (699bp) protein (233aa)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1748_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2768..3238)
DNA (471bp) protein (157aa)
Universal stress protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHA0_THIDA
universal stress protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1748_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3454..4482)
DNA (1029bp) protein (343aa)
histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate aminotransferase n=1 Tax=mine drainage metagenome RepID=E6QDB1_9ZZZZ
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1748_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4575..4937)
DNA (363bp) protein (121aa)
Sulfite reductase, dissimilatory-type, gamma subunit n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJ52_THIDA
sulfite reductase, dissimilatory-type subunit gamma
Sulfite reductase, dissimilatory-type, gamma subunit {ECO:0000313|EMBL:AAZ97318.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_092018_0_1um_scaffold_1748_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5076..5672)
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D46EB
conserved hypothetical protein; putative Cytochrome c domain; putative exported protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1748_9
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5736..6713)
DNA (978bp) protein (326aa)
C4-dicarboxylate transporter/malic acid transport protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J6F3_POLGS
C4-dicarboxylate transporter/malic acid transport protein
Tax=GWC2_Geobacteraceae_58_44_curated
RTP_092018_0_1um_scaffold_1748_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6803..7183)
DNA (381bp) protein (127aa)
Rhodanese-domain-containing protein id=12495916 bin=THIO_MID species=Azotobacter vinelandii genus=Azotobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Rhodanese-domain protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1748_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7229..7933)
DNA (705bp) protein (235aa)
Zn-dependent hydrolase id=12496869 bin=THIO_MID species=Singularimonas variicoloris genus=Singularimonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
metallo-beta-lactamase superfamily protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1748_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8087..8830)
DNA (744bp) protein (248aa)
ahpC_[C]; Alkyl hydroperoxide reductase subunit C-like protein id=12496870 bin=THIO_MID species=Dyella ginsengisoli genus=Dyella taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Alkyl hydroperoxide reductase subunit C-like protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_092018_0_1um_scaffold_1748_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8966..9298)
DNA (333bp) protein (111aa)
Putative uncharacterized protein id=1329019 bin=GWE1_T_denit_62_9 species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1748_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9318..9998)
DNA (681bp) protein (227aa)
Cytochrome c class I id=1329018 bin=GWE1_T_denit_62_9 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
cytochrome c class I
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_1748_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9995..11323)
DNA (1329bp) protein (443aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase id=1329017 bin=GWE1_T_denit_62_9 species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Sulfide dehydrogenase [flavocytochrome C] flavoprotein chain precursor
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_1748_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11336..11554)
DNA (219bp) protein (73aa)
Cytochrome c class I id=1329016 bin=GWE1_T_denit_62_9 species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
cytochrome c class I
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_1748_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11689..12912)
DNA (1224bp) protein (408aa)
Putative uncharacterized protein id=1329015 bin=GWE1_T_denit_62_9 species=Halothiobacillus neapolitanus genus=Halothiobacillus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_1748_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12916..14310)
DNA (1395bp) protein (465aa)
Cytochrome c class I id=1329014 bin=GWE1_T_denit_62_9 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
cytochrome c class I
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_1748_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14580..15317)
DNA (738bp) protein (246aa)
Zinc/iron permease id=1359577 bin=GWE1_T_denit_62_9 species=Methylomicrobium alcaliphilum genus=Methylomicrobium taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
zinc/iron permease
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_1748_20
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15418..16122)
DNA (705bp) protein (235aa)
Putative uncharacterized protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L003_HALNC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX96026.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
RTP_092018_0_1um_scaffold_1748_21
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16223..17149)
DNA (927bp) protein (309aa)
Dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VR47_POLNA
dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
RTP_092018_0_1um_scaffold_1748_22
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17171..17755)
DNA (585bp) protein (195aa)
Rhodanese-like protein n=2 Tax=sulfur-oxidizing symbionts RepID=G2DF06_9GAMM
Rhodanese-like protein {ECO:0000313|EMBL:EGV50779.1}; TaxID=1048808 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Riftia pachyptila (vent Ph05).;"
rhodanese-like protein
RTP_092018_0_1um_scaffold_1748_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17809..18243)
DNA (435bp) protein (145aa)
hypothetical protein; K06886 hemoglobin id=12497484 bin=THIO_MID species=Thauera linaloolentis genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
globin
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1748_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18248..18535)
DNA (288bp) protein (96aa)
Cyd operon protein YbgE id=1359579 bin=GWE1_T_denit_62_9 species=Thalassolituus oleivorans genus=Thalassolituus taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Cyd operon protein YbgE (Cyd_oper_YbgE) family protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1748_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18532..19677)
DNA (1146bp) protein (382aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase id=1359580 bin=GWE1_T_denit_62_9 species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
sulfide-quinone reductase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1748_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19674..19805)
DNA (132bp) protein (44aa)
Cyd operon protein YbgT id=1359581 bin=GWE1_T_denit_62_9 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
cyd operon protein YbgT
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_1748_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19817..20227)
DNA (411bp) protein (137aa)
Uncharacterized protein id=1359582 bin=GWE1_T_denit_62_9 species=Pseudomonas stutzeri genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Conserved protein of unknown function
Tax=GWE1_Thiobacillus_62_9_curated
RTP_092018_0_1um_scaffold_1748_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20238..21374)
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037DD155
cytochrome d ubiquinol oxidase, subunit II
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1748_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21384..22991)
DNA (1608bp) protein (536aa)
cytochrome BD oxidase subunit I n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A5DA2
cytochrome bd ubiquinol oxidase subunit I
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_092018_0_1um_scaffold_1748_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23007..23195)
DNA (189bp) protein (63aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00038110D4
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 44 in total

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