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FFSP_072018_bottom_0_1um_scaffold_234

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
FFSP_072018_bottom_0_1um_scaffold_234_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

258..629
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037C1680
thioredoxin-like protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_234_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

622..1071
DNA (450bp) protein (150aa)
Putative uncharacterized protein id=1329451 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_234_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1088..1993)
DNA (906bp) protein (302aa)
Transcriptional regulator, LysR family id=1329452 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
LysR family transcriptional regulator
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_234_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2132..3007
DNA (876bp) protein (292aa)
heat shock protein HtpX; K03799 heat shock protein HtpX [EC:3.4.24.-] id=12494928 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
heat shock protein HtpX
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_234_5
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3168..3767
DNA (600bp) protein (200aa)
Uncharacterized protein n=2 Tax=Thauera RepID=N6YI47_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EXU78490.1}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
FFSP_072018_bottom_0_1um_scaffold_234_6
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3793..4482
DNA (690bp) protein (230aa)
TerC family integral membrane protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ACS2_9PROT
membrane protein
Membrane protein {ECO:0000313|EMBL:AJP48652.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
FFSP_072018_bottom_0_1um_scaffold_234_7
Oceanimonas sp. GK1, Oceanimonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4504..4731
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Oceanimonas sp. (strain GK1) RepID=H2FWQ4_OCESG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEY02036.1}; TaxID=511062 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Oceanimonas.;" source="Oceanimonas sp. (strain GK1).;"
FFSP_072018_bottom_0_1um_scaffold_234_8
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4728..5807
DNA (1080bp) protein (360aa)
GTPase n=1 Tax=Acidovorax radicis RepID=UPI0002375C92
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
FFSP_072018_bottom_0_1um_scaffold_234_9
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5826..6416
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Thauera sp. 63 RepID=N6XI35_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EXI73762.1}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
hypothetical protein
FFSP_072018_bottom_0_1um_scaffold_234_10

Not on your lists

6413..7294
DNA (882bp) protein (294aa)
Uncharacterized protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T0YGH5_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD32183.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
FFSP_072018_bottom_0_1um_scaffold_234_11
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7305..7622
DNA (318bp) protein (106aa)
pyrC; dihydroorotase (EC:3.5.2.3)
Dihydroorotase n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=PYRC_RALME
Tax=RBG_16_Gammaproteobacteria_62_13__curated
FFSP_072018_bottom_0_1um_scaffold_234_12

Not on your lists

8143..8346
DNA (204bp) protein (68aa)
Dihydroorotase, homodimeric type (Fragment) n=1 Tax=mine drainage metagenome RepID=T0YYE7_9ZZZZ
Dihydroorotase, homodimeric type {ECO:0000313|EMBL:EQD66510.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
dihydroorotase
FFSP_072018_bottom_0_1um_scaffold_234_13

Not on your lists

8463..10745
DNA (2283bp) protein (761aa)
Dihydroxy-acid dehydratase (DAD) (2,3-dihydroxy acid hydrolyase) {ECO:0000313|EMBL:CBH95898.1}; EC=4.2.1.9 {ECO:0000313|EMBL:CBH95898.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase (DAD) (2,3-dihydroxy acid hydrolyase) n=1 Tax=mine drainage metagenome RepID=E6PLU6_9ZZZZ
FFSP_072018_bottom_0_1um_scaffold_234_14
BJP_08E140C01_Actinomycetales_70_11, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

10762..11193
DNA (432bp) protein (144aa)
Tax=BJP_08E140C01_Actinomycetales_70_11
FFSP_072018_bottom_0_1um_scaffold_234_15
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11190..13856
DNA (2667bp) protein (889aa)
ATPase, P-type (Transporting), HAD superfamily, subfamily IC n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SHT3_GALCS
Cation transport ATPase {ECO:0000313|EMBL:BAO83570.1}; TaxID=1458426 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium B1.;"
cation transport ATPase
FFSP_072018_bottom_0_1um_scaffold_234_16
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13996..14160
DNA (165bp) protein (55aa)
Na+/Ca+ antiporter, CaCA family n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5USC0_ROSS1
Sodium:calcium antiporter {ECO:0000313|EMBL:KJS05316.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
CaCA family Na(+)/Ca(+) antiporter
FFSP_072018_bottom_0_1um_scaffold_234_17
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14257..14787
DNA (531bp) protein (177aa)
Na+/Ca+ antiporter, CaCA family n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5USC0_ROSS1
Sodium:calcium antiporter {ECO:0000313|EMBL:KJS05316.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
CaCA family Na(+)/Ca(+) antiporter
FFSP_072018_bottom_0_1um_scaffold_234_18
Geitlerinema sp. PCC 7407, Geitlerinema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(15476..16345)
DNA (870bp) protein (290aa)
Transcriptional regulator, LysR family n=1 Tax=Geitlerinema sp. PCC 7407 RepID=K9S2S6_9CYAN
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AFY64907.1}; TaxID=1173025 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Geitlerinema.;" source="Geitlerinema sp. PCC 7407.;"
FFSP_072018_bottom_0_1um_scaffold_234_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16542..18653
DNA (2112bp) protein (704aa)
Probable high affinity sulfate transporter (SulP) n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFL3_THIDA
high affinity sulfate transporter SulP
Probable high affinity sulfate transporter (SulP) {ECO:0000313|EMBL:AAZ98593.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_234_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18969..20024
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037BECD1
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_234_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20215..20517
DNA (303bp) protein (101aa)
Putative uncharacterized protein id=1329457 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_234_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20572..21831
DNA (1260bp) protein (420aa)
SAM-dependent methyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI000361BD2E
tRNA and rRNA cytosine-C5-methylase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_234_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21880..23697
DNA (1818bp) protein (606aa)
AMP-dependent synthetase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036F055D
long-chain fatty-acid-CoA ligase
Long-chain fatty-acid-CoA ligase {ECO:0000313|EMBL:AAZ98550.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_234_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23725..24966
DNA (1242bp) protein (414aa)
Long chain fatty acid transport protein id=1329460 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
long chain fatty acid transport protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_234_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25235..26407
DNA (1173bp) protein (391aa)
Fatty acid desaturase id=1329462 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
fatty acid desaturase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_234_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(26479..26646)
DNA (168bp) protein (56aa)
50S ribosomal protein L33
50S ribosomal protein L33P; K02913 large subunit ribosomal protein L33 id=12496287 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_234_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(26658..26894)
DNA (237bp) protein (79aa)
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 id=12496288 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
rpmB; 50S ribosomal protein L28
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_234_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27017..27691)
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000382E708
DNA repair protein RadC
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_234_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27724..29046
DNA (1323bp) protein (441aa)
phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase (EC:6.3.2.5)
DNA/pantothenate metabolism flavoprotein id=1329466 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_234_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29063..29509
DNA (447bp) protein (149aa)
dut; deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase id=1329467 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 46 in total

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