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FFSP_072018_bottom_0_1um_scaffold_990

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
FFSP_072018_bottom_0_1um_scaffold_990_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..114)
DNA (114bp) protein (38aa)
Putative membrane protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGW6_THIDA
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_990_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(332..574)
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003799B79
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_990_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(584..1039)
DNA (456bp) protein (152aa)
hemerythrin HHE cation binding region n=1 Tax=Thiobacillus thioparus RepID=UPI000377A7AF
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_990_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1171..3201
DNA (2031bp) protein (677aa)
anaerobic ribonucleoside triphosphate reductase (EC:1.17.4.2)
ribonucleoside triphosphate reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI000364CE33
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_990_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3225..3416
DNA (192bp) protein (64aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036FD2D8
anaerobic ribonucleoside triphosphate reductase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_990_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3462..4154
DNA (693bp) protein (231aa)
putative pyruvate radical-activating enzyme id=12495645 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
pyruvate radical-activating enzyme
Putative pyruvate radical-activating enzyme {ECO:0000313|EMBL:AAZ98123.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_990_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4264..5355)
DNA (1092bp) protein (364aa)
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26)
diaminohydroxyphosphoribosylaminopyrimidine deaminase n=1 Tax=Thiobacillus thioparus RepID=UPI0003638709
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_990_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5356..5805)
DNA (450bp) protein (150aa)
NrdR family transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI0003614265
nrdR; transcriptional regulator NrdR
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_990_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5936..7180)
DNA (1245bp) protein (415aa)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase id=1329927 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_990_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7272..8342
DNA (1071bp) protein (357aa)
Transporter, periplasmic component id=1329928 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
transporter, periplasmic component
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_990_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8409..9086
DNA (678bp) protein (226aa)
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase id=1329929 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ubiquinone biosynthesis monooxygenase Coq7
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_990_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9295..10782
DNA (1488bp) protein (496aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003801F17
glpK; glycerol kinase
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_990_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10967..12235
DNA (1269bp) protein (423aa)
glpD; glycerol-3-phosphate dehydrogenase GlpD (EC:1.1.5.3)
Glycerol kinase id=1329930 bin=GWE1_T_denit_62_9 species=Dokdonia donghaensis genus=Dokdonia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_990_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12258..12386
DNA (129bp) protein (43aa)
hypothetical protein id=1329932 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_990_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12501..13262
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGY2_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98111.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_990_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13259..13759
DNA (501bp) protein (167aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGY3_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98110.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_990_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13834..14229
DNA (396bp) protein (132aa)
Uncharacterized conserved protein id=1329935 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_990_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14370..15176)
DNA (807bp) protein (269aa)
Probable thiol:disulfide interchange protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF73_THIDA
thiol:disulfide interchange protein
Probable thiol:disulfide interchange protein {ECO:0000313|EMBL:AAZ98742.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_990_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15447..15776)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036AC315
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98107.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_990_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15894..17879)
DNA (1986bp) protein (662aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C8859
Elongator protein 3/MiaB/NifB
UPF0313 protein Tbd_2153 {ECO:0000256|HAMAP-Rule:MF_01251}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_990_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18159..18485)
DNA (327bp) protein (109aa)
peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8); K03772 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] id=12494480 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_990_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18590..19669)
DNA (1080bp) protein (360aa)
C4-dicarboxylate ABC transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI0003613133
TRAP dicarboxylate transporter subunit DctM
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_990_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19666..20160)
DNA (495bp) protein (165aa)
TRAP transporter, small subunit id=12498668 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
TRAP transporter, small subunit
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_990_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20157..20768)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CD809
lipase
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_990_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20769..22109)
DNA (1341bp) protein (447aa)
Zn-dependent protease, modulator of DNA gyrase id=1314852 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
microcin-processing peptidase 1
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_990_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22180..22746
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00038155D6
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_990_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22763..23563
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000374B4AB
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_990_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23768..24322)
DNA (555bp) protein (185aa)
Molybdopterin binding domain id=1314847 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
mogA; molybdenum cofactor biosynthesis protein MogA
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_990_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24395..24886
DNA (492bp) protein (164aa)
Thioredoxin-related protein id=1314846 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
thioredoxin-like protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_990_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24883..26061
DNA (1179bp) protein (393aa)
Putative uncharacterized protein id=1314845 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 36 in total

View Taxonomy