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FFSP_072018_bottom_0_1um_scaffold_1150

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
FFSP_072018_bottom_0_1um_scaffold_1150_1
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..371)
DNA (369bp) protein (123aa)
hypothetical protein id=12496262 bin=THIO_MID species=Nitrobacter sp. Nb-311A genus=Nitrobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA05233.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
FFSP_072018_bottom_0_1um_scaffold_1150_2
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(388..2562)
DNA (2175bp) protein (725aa)
von Willebrand factor type A id=12496261 bin=THIO_MID species=Thiomonas intermedia genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
von Willebrand factor, type A {ECO:0000313|EMBL:ABI59083.1}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eutropha (strain C91).;"
von Willebrand factor, type A
FFSP_072018_bottom_0_1um_scaffold_1150_3
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2614..3528)
DNA (915bp) protein (305aa)
CbbQ/NirQ/NorQ domain-containing protein; K04748 nitric oxide reductase NorQ protein id=12496260 bin=THIO_MID species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
CbbQ/NirQ/NorQ domain-containing protein
CbbQ/NirQ/NorQ domain protein {ECO:0000313|EMBL:ADG29541.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
FFSP_072018_bottom_0_1um_scaffold_1150_4
Pandoraea vervacti, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3554..3796)
DNA (243bp) protein (81aa)
Histone H1-like protein HC2 n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LIT3_RALME
Histone {ECO:0000313|EMBL:AJP58822.1}; TaxID=656178 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea vervacti.;"
histone H1-like protein HC2
FFSP_072018_bottom_0_1um_scaffold_1150_5
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3793..4428)
DNA (636bp) protein (212aa)
Cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein id=12496258 bin=THIO_MID species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
putative Cobyrinic acid a,c-diamide synthase cbiA
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:ADG29539.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
FFSP_072018_bottom_0_1um_scaffold_1150_6
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4431..4709)
DNA (279bp) protein (93aa)
putative Pterin-4a-carbinolamine dehydratase (EC:4.2.1.96)
Putative Pterin-4a-carbinolamine dehydratase {ECO:0000313|EMBL:CAZ86901.1}; EC=4.2.1.96 {ECO:0000313|EMBL:CAZ86901.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
hypothetical protein id=12496257 bin=THIO_MID species=Thiomonas intermedia genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
FFSP_072018_bottom_0_1um_scaffold_1150_7
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4702..5139)
DNA (438bp) protein (146aa)
ferritin Dps family protein; K03594 bacterioferritin id=12496256 bin=THIO_MID species=Thiomonas intermedia genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Bfr, Bacterioferritin {ECO:0000313|EMBL:KFZ88939.1}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
ferritin Dps family protein
FFSP_072018_bottom_0_1um_scaffold_1150_8

Not on your lists

comp(5129..5545)
DNA (417bp) protein (139aa)
Microcompartments protein n=2 Tax=root RepID=G0JL92_9GAMM
microcompartments protein
Carboxysome structural polypeptide {ECO:0000313|EMBL:CBI04881.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
FFSP_072018_bottom_0_1um_scaffold_1150_9
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5604..5900)
DNA (297bp) protein (99aa)
Major carboxysome shell protein n=2 Tax=Thiomonas RepID=D6CQK6_THIA3
csoS1a; Major carboxysome shell protein
Major carboxysome shell protein {ECO:0000313|EMBL:CAZ86897.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
FFSP_072018_bottom_0_1um_scaffold_1150_10
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6000..6245)
DNA (246bp) protein (82aa)
Carboxysome polypeptide n=2 Tax=Thiomonas RepID=D6CQK5_THIA3
Carboxysome polypeptide
Carboxysome peptide B {ECO:0000313|EMBL:ADG29533.1}; Carboxysome polypeptide {ECO:0000313|EMBL:AAD02450.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
FFSP_072018_bottom_0_1um_scaffold_1150_11
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6245..6502)
DNA (258bp) protein (86aa)
Ethanolamine utilization protein EutN/carboxysome structural protein Ccml n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AHV7_NITEC
ethanolamine utilization protein EutN/carboxysome structural protein Ccml
Ethanolamine utilization protein EutN/carboxysome structural protein Ccml {ECO:0000313|EMBL:ABI59075.1}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eutropha (strain C91).;"
FFSP_072018_bottom_0_1um_scaffold_1150_12
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6529..7992)
DNA (1464bp) protein (488aa)
carboxysome shell carbonic anhydrase id=12496252 bin=THIO_MID species=Thiomonas intermedia genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
carboxysome shell carbonic anhydrase
Carboxysome shell carbonic anhydrase {ECO:0000313|EMBL:ADG29531.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
FFSP_072018_bottom_0_1um_scaffold_1150_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8042..10735)
DNA (2694bp) protein (898aa)
carboxysome shell protein id=12496251 bin=THIO_MID species=Thiomonas intermedia genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
carboxysome shell protein
Carboxysome shell protein CsoS2 {ECO:0000313|EMBL:ABE64929.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
FFSP_072018_bottom_0_1um_scaffold_1150_14
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10878..11204)
DNA (327bp) protein (109aa)
ribulose-bisphosphate carboxylase (EC:4.1.1.39); K01602 ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] id=12496250 bin=THIO_MID species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Ribulose 1,5-bisphosphate carboxylase small subunit {ECO:0000313|EMBL:ABE64928.1}; EC=4.1.1.39 {ECO:0000313|EMBL:ABE64928.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
ribulose bisphosphate carboxylase small subunit
FFSP_072018_bottom_0_1um_scaffold_1150_15
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11319..12740)
DNA (1422bp) protein (474aa)
rbcL; Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (RuBisCO large subunit) (EC:4.1.1.39) id=12496249 bin=THIO_MID species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
ribulose-bisphosphate carboxylase (EC:4.1.1.39)
Ribulose bisphosphate carboxylase large chain {ECO:0000255|HAMAP-Rule:MF_01338}; Short=RuBisCO large subunit {ECO:0000255|HAMAP-Rule:MF_01338};; EC=4.1.1.39 {ECO:0000255|HAMAP-Rule:MF_01338};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
FFSP_072018_bottom_0_1um_scaffold_1150_16
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13006..13917
DNA (912bp) protein (304aa)
LysR family transcriptional regulator id=12496248 bin=THIO_MID species=unknown genus=Nitrobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AHK78649.1}; TaxID=1354791 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halochloris str. A.;"
FFSP_072018_bottom_0_1um_scaffold_1150_17
Thioalkalivibrio thiocyanoxidans, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13924..14235)
DNA (312bp) protein (104aa)
Nitrogen regulatory protein P-II n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DKJ8_9GAMM
nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:AHE98912.1}; TaxID=713587 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio thiocyanoxidans ARh 4.;"
FFSP_072018_bottom_0_1um_scaffold_1150_18
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14249..15229)
DNA (981bp) protein (327aa)
Putative uncharacterized protein n=1 Tax=Thiocapsa marina 5811 RepID=F9U707_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EGV20033.1}; TaxID=768671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" source="Thiocapsa marina 5811.;"
hypothetical protein
FFSP_072018_bottom_0_1um_scaffold_1150_19
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15418..16731)
DNA (1314bp) protein (438aa)
sulfate transporter id=12496266 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
sulfate transporter
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
Displaying 19 items

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