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FFSP_072018_bottom_0_1um_scaffold_1514

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
FFSP_072018_bottom_0_1um_scaffold_1514_1
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

388..846
DNA (459bp) protein (153aa)
Transposase n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BMR3_9GAMM
ISL3 family transposase
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
FFSP_072018_bottom_0_1um_scaffold_1514_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1155..2126)
DNA (972bp) protein (324aa)
isocitrate dehydrogenase (NADP) (EC:1.1.1.42)
Isocitrate dehydrogenase [NADP] id=1324812 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_1514_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2114..2326)
DNA (213bp) protein (71aa)
isocitrate dehydrogenase (NADP) (EC:1.1.1.42)
Isocitrate dehydrogenase [NADP] id=1324812 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_1514_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2382..2924
DNA (543bp) protein (181aa)
ribosomal large subunit pseudouridine synthase E (EC:5.4.99.-)
Pseudouridine synthase id=1324813 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_1514_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2917..3381
DNA (465bp) protein (155aa)
Putative hydrolase id=1324814 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hydrolase
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_1514_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3434..4507
DNA (1074bp) protein (358aa)
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA id=1324815 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_1514_7
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4566..4835
DNA (270bp) protein (90aa)
prevent-host-death family protein id=12495379 bin=THIO_HI species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=THIO_HI organism_group=Betaproteobacteria
Prevent-host-death protein {ECO:0000313|EMBL:EPZ16207.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
Potential antitoxin, prevent-host-death family protein
FFSP_072018_bottom_0_1um_scaffold_1514_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4840..5172
DNA (333bp) protein (111aa)
putative plasmid stabilization system protein id=12495378 bin=THIO_HI species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Death on curing protein, Doc toxin {ECO:0000313|EMBL:CCU61620.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
FFSP_072018_bottom_0_1um_scaffold_1514_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5214..6911
DNA (1698bp) protein (566aa)
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase id=1324816 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_1514_10
Thioalkalivibrio thiocyanoxidans, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7391..7723)
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DGH7_9GAMM
MazF family transcriptional regulator
MazF family transcriptional regulator {ECO:0000313|EMBL:AHE96959.1}; TaxID=713587 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio thiocyanoxidans ARh 4.;"
FFSP_072018_bottom_0_1um_scaffold_1514_11
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7696..7905)
DNA (210bp) protein (70aa)
Putative uncharacterized protein n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DGH6_9GAMM
hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
FFSP_072018_bottom_0_1um_scaffold_1514_12
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7996..8358)
DNA (363bp) protein (121aa)
hypothetical protein id=12494655 bin=THIO_HI species=Burkholderia sp. SJ98 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RBG_16_Gallionellales_57_15_curated
FFSP_072018_bottom_0_1um_scaffold_1514_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8379..8789)
DNA (411bp) protein (137aa)
putative protein containing PilT protein domain id=12497469 bin=THIO_MID species=Gallionella sp. SCGC AAA018-N21 genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
putative protein containing PilT protein domain
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
FFSP_072018_bottom_0_1um_scaffold_1514_14
CG_Gallio_03, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8796..9008)
DNA (213bp) protein (71aa)
hypothetical protein id=12497470 bin=THIO_MID species=Gallionella sp. SCGC AAA018-N21 genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=CG_Gallio_03
FFSP_072018_bottom_0_1um_scaffold_1514_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9082..9663)
DNA (582bp) protein (194aa)
ATP-dependent DNA helicase RecQ n=1 Tax=Thiobacillus thioparus RepID=UPI00036ECAF1
ATP-dependent DNA helicase RecQ
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_1514_16
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9705..11060)
DNA (1356bp) protein (452aa)
Tax=CG_Beta_01
FFSP_072018_bottom_0_1um_scaffold_1514_17
unknown

Not on your lists

comp(11060..11815)
DNA (756bp) protein (252aa)

This feature has no annotations

FFSP_072018_bottom_0_1um_scaffold_1514_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12148..13068)
DNA (921bp) protein (307aa)
hypothetical protein id=12493558 bin=THIO_HI species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
band 7 protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_1514_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13110..13517)
DNA (408bp) protein (136aa)
hypothetical protein id=12493559 bin=THIO_HI species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_1514_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13519..14025)
DNA (507bp) protein (169aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000369A6E0
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_1514_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14206..14871)
DNA (666bp) protein (222aa)
LemA family protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F2857
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_1514_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14904..15956)
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003769A50
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97675.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_1514_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16067..16732)
DNA (666bp) protein (222aa)
DNA polymerase n=1 Tax=Thiobacillus thioparus RepID=UPI00036D7FFF
phage DNA polymerase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_1514_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16734..17213)
DNA (480bp) protein (160aa)
30S ribosomal protein S18 (EC:2.3.1.-)
alanine acetyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI000378B1CD
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_1514_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17210..17899)
DNA (690bp) protein (230aa)
glycoprotease n=1 Tax=Thiobacillus denitrificans RepID=UPI0003637735
glycoprotease
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_1514_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17910..18998)
DNA (1089bp) protein (363aa)
L-sorbosone dehydrogenase, putative id=1348663 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
L-sorbosone dehydrogenase
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_1514_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19010..19390)
DNA (381bp) protein (127aa)
Putative uncharacterized protein id=1348664 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_1514_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19755..20639
DNA (885bp) protein (295aa)
Nucleotide binding protein id=1348665 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
nucleotide binding protein
Tax=GWE1_Thiobacillus_62_9_curated
Displaying 28 items

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