ggKbase home page

FFSP_072018_bottom_0_1um_scaffold_396

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
FFSP_072018_bottom_0_1um_scaffold_396_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..698
DNA (696bp) protein (232aa)
protein disaggregation chaperone n=1 Tax=Thiobacillus thioparus RepID=UPI00037479E0
ClpB protein
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_396_2
unknown

Not on your lists

1366..1473
DNA (108bp) protein (36aa)

This feature has no annotations

FFSP_072018_bottom_0_1um_scaffold_396_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1511..2902
DNA (1392bp) protein (464aa)
undecaprenyl-phosphate glucose phosphotransferase (EC:2.7.8.-)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003814F6B
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_396_4
unknown

Not on your lists

3127..3462
DNA (336bp) protein (112aa)

This feature has no annotations

FFSP_072018_bottom_0_1um_scaffold_396_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3479..4696
DNA (1218bp) protein (406aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000365CA59
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_396_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4764..5549
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036921FB
polysaccharide export outer membrane protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_396_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5574..6998
DNA (1425bp) protein (475aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037F6A5B
chain length determinant protein EpsF
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_396_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6995..7894
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000378B329
epsG; chain length determinant protein tyrosine kinase EpsG
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_396_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7900..9189
DNA (1290bp) protein (430aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036CC980
putative surface polysaccharide polymerase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_396_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9179..10321
DNA (1143bp) protein (381aa)
gumH; GumH (EC:2.4.1.-)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000375A6E4
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_396_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10318..11334
DNA (1017bp) protein (339aa)
eglA; putative endoglucanase (EC:3.2.1.4)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003753978
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_396_12
Marinobacter nanhaiticus, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11515..12645
DNA (1131bp) protein (377aa)
Xanthan biosynthesis glucuronosyltransferase GumK n=1 Tax=Marinobacter nanhaiticus D15-8W RepID=N6WUV4_9ALTE
Xanthan biosynthesis glucuronosyltransferase GumK {ECO:0000313|EMBL:ENO14787.1}; TaxID=626887 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter nanhaiticus D15-8W.;"
gumK; xanthan biosynthesis glucuronosyltransferase GumK
FFSP_072018_bottom_0_1um_scaffold_396_13
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12709..14031
DNA (1323bp) protein (441aa)
Nucleotide sugar dehydrogenase n=1 Tax=Herbaspirillum sp. YR522 RepID=J3HKM4_9BURK
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:EJM98510.1}; Flags: Precursor;; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
nucleotide sugar dehydrogenase
FFSP_072018_bottom_0_1um_scaffold_396_14
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14266..15207
DNA (942bp) protein (314aa)
Glycosyl transferase, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IU74_RHOCS
glycosyl transferase family protein
Glycosyl transferase, putative {ECO:0000313|EMBL:ACI99951.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
FFSP_072018_bottom_0_1um_scaffold_396_15
Klebsiella pneumoniae, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15338..16645
DNA (1308bp) protein (436aa)
Polysaccharide biosynthesis protein n=1 Tax=Serratia marcescens VGH107 RepID=M3CJF5_SERMA
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:AHN24564.1}; TaxID=573 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella pneumoniae.;"
O-antigen flippase
FFSP_072018_bottom_0_1um_scaffold_396_16
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16626..17420
DNA (795bp) protein (265aa)
ExoV-like family protein n=3 Tax=Xanthomonas RepID=H1XIF5_9XANT
Strain LMCP11 contig_28, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ24688.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
gumL; xanthan biosynthesis pyruvyltransferase GumL
FFSP_072018_bottom_0_1um_scaffold_396_17
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17452..18552
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035FF7D7
gumF; Xanthan biosynthesis acetyltransferase GumF
Xanthan biosynthesis acetyltransferase GumF {ECO:0000313|EMBL:AIY42089.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
FFSP_072018_bottom_0_1um_scaffold_396_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18549..19337
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000365CEB8
gumM; Xanthan biosynthesis glycosyltransferase GumM
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_396_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20127..21860
DNA (1734bp) protein (578aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000363E572
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96786.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_396_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21857..25339
DNA (3483bp) protein (1161aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000380F90C
signal peptide protein
Putative signal peptide protein {ECO:0000313|EMBL:AAZ96787.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_396_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25443..26186
DNA (744bp) protein (248aa)
surE; stationary phase survival protein SurE (EC:3.1.3.5 3.1.3.6 3.6.1.11)
5'-nucleotidase SurE {ECO:0000255|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000255|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000255|HAMAP-Rule:MF_00060}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
stationary phase survival protein SurE n=1 Tax=Thiobacillus thioparus RepID=UPI000371C54F
FFSP_072018_bottom_0_1um_scaffold_396_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26171..26851
DNA (681bp) protein (227aa)
protein-L-isoaspartate(D-aspartate) O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000255|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000255|HAMAP-Rule:MF_00090}; Protein L-isoaspartyl methyltransferase {ECO:0000255|HAMAP-Rule:MF_00090}; Protein-beta-aspartate methyltransferase {ECO:0000255|HAMAP-Rule:MF_00090}; Short=PIMT {ECO:0000255|HAMAP-Rule:MF_00090};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
protein-L-isoaspartate O-methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00036B3086
FFSP_072018_bottom_0_1um_scaffold_396_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26848..27753
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037D2641
peptidoglycan-binding protein LysM
Peptidoglycan-binding protein LysM {ECO:0000313|EMBL:AAZ96790.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_396_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27750..28691
DNA (942bp) protein (314aa)
RNA polymerase sigma factor RpoS n=1 Tax=Thiobacillus thioparus RepID=UPI0003782783
RNA polymerase sigma factor RpoS
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_396_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28744..29400
DNA (657bp) protein (219aa)
haloacid dehalogenase n=1 Tax=Thiobacillus thioparus RepID=UPI00036EC10E
HAD family hydrolase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_396_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30193..31068)
DNA (876bp) protein (292aa)
Putative diguanylate cyclase (GGDEF domain) id=1319189 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
diguanylate cyclase
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_396_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31083..31955)
DNA (873bp) protein (291aa)
Putative uncharacterized protein id=1319188 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_396_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32079..32513)
DNA (435bp) protein (145aa)
Putative uncharacterized protein id=1319182 bin=GWE1_T_denit_62_9 species=Candidatus Accumulibacter phosphatis genus=Candidatus Accumulibacter taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_396_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32510..33277)
DNA (768bp) protein (256aa)
Short-chain dehydrogenase family protein id=1319181 bin=GWE1_T_denit_62_9 species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
short-chain dehydrogenase/reductase SDR
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_396_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33274..33804)
DNA (531bp) protein (177aa)
Lipoprotein, putative id=1319180 bin=GWE1_T_denit_62_9 species=unknown genus=Rubrivivax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
putative lipoprotein
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 59 in total

View Taxonomy