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FFSP_072018_bottom_0_1um_scaffold_453

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
FFSP_072018_bottom_0_1um_scaffold_453_1
gamma proteobacterium BDW918, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1333)
DNA (1332bp) protein (444aa)
gtfA; sucrose phosphorylase (EC:2.4.1.7)
sucrose phosphorylase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037FF13C
Alpha amylase catalytic domain-containing protein {ECO:0000313|EMBL:EIF44605.1}; TaxID=1168065 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium BDW918.;"
FFSP_072018_bottom_0_1um_scaffold_453_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1436..2941)
DNA (1506bp) protein (502aa)
glucosyl-glycerol-phosphate synthase (EC:2.4.1.213)
Glucosyl-glycerol-phosphate synthase {ECO:0000313|EMBL:AAZ98579.1}; EC=2.4.1.213 {ECO:0000313|EMBL:AAZ98579.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
glucosylglycerol-phosphate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036AE264
FFSP_072018_bottom_0_1um_scaffold_453_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2898..3689)
DNA (792bp) protein (264aa)
alpha,alpha-trehalose-phosphate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003809533
alpha,alpha-trehalose-phosphate synthase
Alpha,alpha-trehalose-phosphate synthase {ECO:0000313|EMBL:AAZ98580.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_453_4

Not on your lists

comp(3682..4872)
DNA (1191bp) protein (397aa)
Putative Glycerol-3-phosphate dehydrogenase (NAD(P)+) 1 (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1) gpsA1 {ECO:0000313|EMBL:CBH99304.1}; EC=1.1.1.94 {ECO:0000313|EMBL:CBH99304.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative Glycerol-3-phosphate dehydrogenase [NAD(P)+] 1 (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1) gpsA1 (EC:1.1.1.94)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B8CBF
FFSP_072018_bottom_0_1um_scaffold_453_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5538..6635
DNA (1098bp) protein (366aa)
Chromate transporter id=1359640 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
chromate transporter
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_453_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6645..7019
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003808155
rhodanese-like protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_453_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7113..7445
DNA (333bp) protein (111aa)
sulfur transfer protein TusE n=1 Tax=Thiobacillus thioparus RepID=UPI00037A06D9
DsrC -like protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_453_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7512..7982)
DNA (471bp) protein (157aa)
Putative uncharacterized protein id=1351674 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_453_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8178..8672
DNA (495bp) protein (165aa)
phosphoribosylaminoimidazole carboxylase, catalytic subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase id=1351676 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_453_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8662..9873
DNA (1212bp) protein (404aa)
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC:4.1.1.21)
Phosphoribosylaminoimidazole carboxylase, ATPase subunit id=1351677 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_453_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9863..10303
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C9BB5
exported protein
Exported protein {ECO:0000313|EMBL:AAZ98616.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_453_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10313..11365)
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C2670
Uncharacterized protein {ECO:0000313|EMBL:AAZ98617.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
hypothetical protein
FFSP_072018_bottom_0_1um_scaffold_453_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11382..12080)
DNA (699bp) protein (233aa)
Putative uncharacterized protein id=1351680 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_453_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12083..12724)
DNA (642bp) protein (214aa)
phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
phosphoribosylglycinamide formyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037482F8
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_453_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12732..13760)
DNA (1029bp) protein (343aa)
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
phosphoribosylaminoimidazole synthetase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003649892
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_453_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13801..15786
DNA (1986bp) protein (662aa)
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036B267E
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_453_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15957..17219
DNA (1263bp) protein (421aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000381F4AF
transmembrane protein
Probable transmembrane protein {ECO:0000313|EMBL:AAZ98154.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_453_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17291..18040)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F604D
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_453_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18135..19256
DNA (1122bp) protein (374aa)
divalent ion tolerance protein CutA n=1 Tax=Thiobacillus denitrificans RepID=UPI000382CA14
metal dependent phosphohydrolase
Metal dependent phosphohydrolase, HD region {ECO:0000313|EMBL:AAZ98623.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_453_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19271..21790
DNA (2520bp) protein (840aa)
Periplasmic Sensor Hybrid Histidine Kinase id=1304126 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
periplasmic sensor hybrid histidine kinase
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_453_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21770..22684)
DNA (915bp) protein (305aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Putative RpfF protein id=1304127 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_453_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22851..23663)
DNA (813bp) protein (271aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003795B73
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_453_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23664..24119)
DNA (456bp) protein (152aa)
Putative uncharacterized protein id=1304129 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98627.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_453_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24166..25050)
DNA (885bp) protein (295aa)
N-acetylglutamate kinase (EC:2.7.2.8)
acetylglutamate kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003797540
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_453_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25134..25556)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000380A737
heat shock protein Hsp20
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_453_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25691..26257
DNA (567bp) protein (189aa)
RNA polymerase sigma factor id=1304133 bin=GWE1_T_denit_62_9 species=unknown genus=Methylovorus taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
RNA polymerase sigma factor
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_453_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26254..26511
DNA (258bp) protein (86aa)
Putative uncharacterized protein id=1304134 bin=GWE1_T_denit_62_9 species=unknown genus=Methylotenera taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_453_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26582..26902
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003709838
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_453_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26918..27559
DNA (642bp) protein (214aa)
UPF0276 protein Nmul_A2550 id=1304136 bin=GWE1_T_denit_62_9 species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
Displaying 29 items

View Taxonomy