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RTP_03222018_0_2um_scaffold_2335

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_2335_1
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..563)
DNA (561bp) protein (187aa)
Transglutaminase domain protein n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DK42_METS0
transglutaminase domain-containing protein
Transglutaminase domain protein {ECO:0000313|EMBL:ADI28427.1}; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
RTP_03222018_0_2um_scaffold_2335_2
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(569..1366)
DNA (798bp) protein (266aa)
Transglutaminase domain protein n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DK41_METS0
transglutaminase domain-containing protein
Transglutaminase domain protein {ECO:0000313|EMBL:ADI28426.1}; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
RTP_03222018_0_2um_scaffold_2335_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1639..2727
DNA (1089bp) protein (363aa)
aroB; 3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase id=1318106 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_2335_4
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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2711..3847
DNA (1137bp) protein (379aa)
deoxyguanosinetriphosphate triphosphohydrolase-like protein; K01129 dGTPase [EC:3.1.5.1] id=12495717 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
deoxyguanosinetriphosphate triphosphohydrolase
RTP_03222018_0_2um_scaffold_2335_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3896..5248)
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AM09_9PROT
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_2335_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5313..5762)
DNA (450bp) protein (150aa)
hypothetical protein; K09004 hypothetical protein id=12497870 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_2335_7
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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5965..6534
DNA (570bp) protein (190aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B5D1_9PROT
RNA polymerase, sigma-24 subunit, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:BAN35742.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_03222018_0_2um_scaffold_2335_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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6531..7277
DNA (747bp) protein (249aa)
hypothetical protein id=12497868 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_2335_9
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7329..8045
DNA (717bp) protein (239aa)
rsuA; ribosomal small subunit pseudouridine synthase A protein (EC:4.2.1.70)
Ribosomal small subunit pseudouridine synthase A protein {ECO:0000313|EMBL:ABR89883.1}; EC=4.2.1.70 {ECO:0000313|EMBL:ABR89883.1};; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
Ribosomal small subunit pseudouridine synthase A protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SZE3_JANMA
RTP_03222018_0_2um_scaffold_2335_10
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8034..9620)
DNA (1587bp) protein (529aa)
hypothetical protein n=1 Tax=Desulfobacter curvatus RepID=UPI00036238DF
signal transduction protein containing a membrane domain an EAL and a GGDEF domain
Tax=BJP_IG2102_Gammaproteobacteria_62_140
RTP_03222018_0_2um_scaffold_2335_11

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9844..10800
DNA (957bp) protein (319aa)
D-alanyl-D-alanine endopeptidase (DD-endopeptidase) (Penicillin-binding protein 5) (PBP-5) {ECO:0000313|EMBL:CBI09759.1}; EC=3.4.21.- {ECO:0000313|EMBL:CBI09759.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
D-alanyl-D-alanine endopeptidase (DD-endopeptidase) (Penicillin-binding protein 5) (PBP-5) n=1 Tax=mine drainage metagenome RepID=E6QR87_9ZZZZ
D-alanyl-D-alanine carboxypeptidase-like protein
RTP_03222018_0_2um_scaffold_2335_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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10800..11351
DNA (552bp) protein (184aa)
Esterase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFS9_THIDA
esterase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
RTP_03222018_0_2um_scaffold_2335_13

Not on your lists

11367..12203
DNA (837bp) protein (279aa)
Putative exoribonuclease II {ECO:0000313|EMBL:CBI09761.1}; EC=3.1.13.1 {ECO:0000313|EMBL:CBI09761.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Putative exoribonuclease II n=1 Tax=mine drainage metagenome RepID=E6QR89_9ZZZZ
ribonuclease II
Displaying 13 items

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