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RTP_03222018_0_2um_scaffold_5457

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_5457_1
R_Gallionellales_60_31, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3..815)
DNA (813bp) protein (271aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Azoarcus sp. (strain BH72) RepID=SYL_AZOSB
Tax=RIFCSPLOWO2_02_Gallionellales_60_31_curated
RTP_03222018_0_2um_scaffold_5457_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

948..1838
DNA (891bp) protein (297aa)
cbbP; phosphoribulokinase (EC:2.7.1.19)
phosphoribulokinase n=1 Tax=Thiobacillus thioparus RepID=UPI00035F3A81
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_5457_3
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1903..2298)
DNA (396bp) protein (132aa)
Putative uncharacterized protein n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DLW2_9GAMM
SCP-2 sterol transfer family protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_03222018_0_2um_scaffold_5457_4
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2383..3162)
DNA (780bp) protein (260aa)
Spermidine synthase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AMB4_9PROT
Spermidine synthase {ECO:0000313|EMBL:GAO37765.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
spermidine synthase
RTP_03222018_0_2um_scaffold_5457_5
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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3235..4938
DNA (1704bp) protein (568aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
proS; prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B5X2_9PROT
RTP_03222018_0_2um_scaffold_5457_6
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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4971..5567
DNA (597bp) protein (199aa)
transglycosylase n=1 Tax=Methylotenera RepID=UPI0003638A31
Lytic transglycosylase catalytic
Tax=BJP_S1_SUB10_Methylophilales_55_32
RTP_03222018_0_2um_scaffold_5457_7
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5576..6697)
DNA (1122bp) protein (374aa)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
proB; gamma-glutamyl kinase (EC:2.7.2.11)
Glutamate 5-kinase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AMB0_9PROT
RTP_03222018_0_2um_scaffold_5457_8
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6700..7419)
DNA (720bp) protein (240aa)
GTPase Obg n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DMX7_METS0
GTP-binding protein Obg/CgtA
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
RTP_03222018_0_2um_scaffold_5457_9
Pelistega sp. HM-7, Pelistega, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7400..7624)
DNA (225bp) protein (75aa)
GTPase CgtA n=1 Tax=Pelistega sp. HM-7 RepID=V8G6Z2_9BURK
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=1414851 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pelistega.;" source="Pelistega sp. HM-7.;"
putative GTP-binding protein
RTP_03222018_0_2um_scaffold_5457_10
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7704..7967)
DNA (264bp) protein (88aa)
50S ribosomal protein L27 n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QM68_AZOSU
rpmA; 50S ribosomal protein L27
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539, ECO:0000313|EMBL:AJP48028.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
RTP_03222018_0_2um_scaffold_5457_11
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7981..8292)
DNA (312bp) protein (104aa)
50S ribosomal protein L21 n=1 Tax=Thauera terpenica 58Eu RepID=T0ARN2_9RHOO
50S ribosomal protein L21
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
RTP_03222018_0_2um_scaffold_5457_12
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8450..9412
DNA (963bp) protein (321aa)
trans-hexaprenyltranstransferase (EC:2.5.1.30)
Trans-hexaprenyltranstransferase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAI4_9PROT
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_03222018_0_2um_scaffold_5457_13
unknown

Not on your lists

9412..9600
DNA (189bp) protein (63aa)

This feature has no annotations

RTP_03222018_0_2um_scaffold_5457_14
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9593..11200
DNA (1608bp) protein (536aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ACV9_9PROT
integral membrane sensor signal transduction histidine kinase
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_03222018_0_2um_scaffold_5457_15
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11194..12522
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Leeia oryzae RepID=UPI0003748481
Fis family transcriptional regulator
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_03222018_0_2um_scaffold_5457_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12508..13515)
DNA (1008bp) protein (336aa)
sodium/hydrogen exchanger n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D04BD
Ca2+/H+ antiporter
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_5457_17
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13525..14217)
DNA (693bp) protein (231aa)
5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC:1.1.1.193 3.5.4.26); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] id=12496643 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26)
Tax=RBG_16_Betaproteobacteria_58_11_curated
Displaying 17 items

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