ggKbase home page

RTP_03222018_0_2um_scaffold_5530

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_5530_1
unknown

Not on your lists

comp(3..83)
DNA (81bp) protein (27aa)

This feature has no annotations

RTP_03222018_0_2um_scaffold_5530_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80..382)
DNA (303bp) protein (101aa)
Mercuric transport protein periplasmic component id=1311320 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
mercuric transport protein periplasmic protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_5530_3
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(391..741)
DNA (351bp) protein (117aa)
Mercuric transport protein MerT n=2 Tax=Delftia acidovorans RepID=A9BR73_DELAS
putative mercuric transport protein
Mercuric transporter {ECO:0000313|EMBL:EPD44963.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
RTP_03222018_0_2um_scaffold_5530_4
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

824..1237
DNA (414bp) protein (138aa)
Regulatory protein n=1 Tax=Enterobacter aerogenes RepID=Q46655_ENTAE
transcriptional regulator MerR
Tax=RBG_16_Gamma2_64_11_curated
RTP_03222018_0_2um_scaffold_5530_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1331..1948)
DNA (618bp) protein (206aa)
Two Component Transcriptional Regulator, LuxR family n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF76_THIDA
LuxR family transcriptional regulator
Two Component Transcriptional Regulator, LuxR family {ECO:0000313|EMBL:AAZ98739.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_5530_6
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1969..2775)
DNA (807bp) protein (269aa)
Short chain dehydrogenase family protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K2E5_AZOSB
short chain dehydrogenase
Tax=GWA2_Rhodocyclales_65_20_curated
RTP_03222018_0_2um_scaffold_5530_7

Not on your lists

comp(2799..3455)
DNA (657bp) protein (219aa)
Thiol:disulfide interchange protein dsbA n=1 Tax=mine drainage metagenome RepID=E6QSR0_9ZZZZ
Thiol:disulfide interchange protein dsbA {ECO:0000313|EMBL:CBI10282.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
thiol:disulfide interchange protein DsbA
RTP_03222018_0_2um_scaffold_5530_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3475..4089)
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035DD89D
sporulation domain-containing protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_5530_9

Not on your lists


comp(4102..5844)
DNA (1743bp) protein (581aa)
Arginyl-tRNA synthetase {ECO:0000313|EMBL:CBI10284.1}; EC=6.1.1.19 {ECO:0000313|EMBL:CBI10284.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginyl-tRNA synthetase n=1 Tax=mine drainage metagenome RepID=E6QSR2_9ZZZZ
RTP_03222018_0_2um_scaffold_5530_10
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5907..6287
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Thiocapsa marina 5811 RepID=F9UHY9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AKH20553.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
RTP_03222018_0_2um_scaffold_5530_11
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6284..6619
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00036938BC
UPF0102 protein OYT1_02238 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_5530_12
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6674..7264
DNA (591bp) protein (197aa)
Phosphoheptose isomerase {ECO:0000255|HAMAP-Rule:MF_00067}; EC=5.3.1.28 {ECO:0000255|HAMAP-Rule:MF_00067};; Sedoheptulose 7-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_00067}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
Phosphoheptose isomerase n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=GMHA_AROAE
gmhA; phosphoheptose isomerase
RTP_03222018_0_2um_scaffold_5530_13
unknown

Not on your lists

7264..7347
DNA (84bp) protein (28aa)

This feature has no annotations

Displaying 13 items

View Taxonomy