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RTP_03222018_0_2um_scaffold_4247

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_4247_1
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..852)
DNA (852bp) protein (284aa)
Ammonium transporter n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CQT7_SIDLE
Ammonia channel {ECO:0000313|EMBL:GAO32982.1}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
ammonium transporter
RTP_03222018_0_2um_scaffold_4247_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1005..1796)
DNA (792bp) protein (264aa)
Sec-independent protein translocase protein TatC n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI73_THIDA
Sec-independent protein translocase TatC
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_4247_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1783..2193)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000374C262
twin-arginine translocation protein TatB
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_4247_4
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2206..2424)
DNA (219bp) protein (73aa)
Sec-independent protein translocase protein TatA n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B165_9PROT
twin arginine-targeting protein translocase, TatA/E family
Tax=CG_Beta_01
RTP_03222018_0_2um_scaffold_4247_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2434..2772)
DNA (339bp) protein (113aa)
HIT family protein; K02503 Hit-like protein involved in cell-cycle regulation id=12493544 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
HIT family protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_4247_6
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2769..3095)
DNA (327bp) protein (109aa)
Phosphoribosyl-ATP pyrophosphatase n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DLL3_METS0
phosphoribosyl-ATP diphosphatase
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_03222018_0_2um_scaffold_4247_7
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3092..3487)
DNA (396bp) protein (132aa)
hisI; phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19)
Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AIR8_9PROT
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_03222018_0_2um_scaffold_4247_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3484..4245)
DNA (762bp) protein (254aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Oxalobacter formigenes OXCC13 RepID=C3XCD3_OXAFO
imidazoleglycerol phosphate synthase, cyclase subunit
RTP_03222018_0_2um_scaffold_4247_9
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4246..4989)
DNA (744bp) protein (248aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Methylophilus methylotrophus RepID=UPI0003605711
hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
RTP_03222018_0_2um_scaffold_4247_10
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5014..5703)
DNA (690bp) protein (230aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
imidazole glycerol phosphate synthase subunit HisH (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisH id=1333508 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
RTP_03222018_0_2um_scaffold_4247_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5705..6292)
DNA (588bp) protein (196aa)
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19); K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] id=12493550 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_4247_12
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6298..7371)
DNA (1074bp) protein (358aa)
hisC; histidinol-phosphate aminotransferase (EC:2.6.1.9)
histidinol-phosphate aminotransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CD7CB
Tax=CG_Beta_01
RTP_03222018_0_2um_scaffold_4247_13

Not on your lists

comp(7374..8513)
DNA (1140bp) protein (380aa)
Histidinol dehydrogenase (HDH) {ECO:0000313|EMBL:CBI10038.1}; EC=1.1.1.23 {ECO:0000313|EMBL:CBI10038.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hisD; histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase (HDH) n=1 Tax=mine drainage metagenome RepID=E6QS16_9ZZZZ
Displaying 13 items

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