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RTP_01242018_0_2um_Hydrogenophilales_61_5

RTP_01242018_0_2um_RIFOXYD1_FULL_Hydrogenophilales_62_11_curated_61_5
In projects: RTP_01242018_0_2um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated  →  Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 301-350 of 1197 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_01242018_0_2um_scaffold_12001
Order: Hydrogenophilales (66.67%)
3 1137 bp 55.15 5.28 81.53
RTP_01242018_0_2um_scaffold_4073
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2436 bp 65.44 5.54 100.12
RTP_01242018_0_2um_scaffold_10853
Order: Hydrogenophilales (66.67%)
3 1206 bp 65.92 2.74 98.76
RTP_01242018_0_2um_scaffold_2925
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 3343 bp 63.78 6.82 81.66
RTP_01242018_0_2um_scaffold_8062
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1440 bp 58.40 3.96 83.54
RTP_01242018_0_2um_scaffold_10086
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1258 bp 65.90 5.13 90.14
RTP_01242018_0_2um_scaffold_7539
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1509 bp 61.56 6.56 97.42
RTP_01242018_0_2um_scaffold_8575
Order: Hydrogenophilales (100%)
3 1388 bp 60.01 5.19 98.34
RTP_01242018_0_2um_scaffold_9553
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1299 bp 64.36 4.62 98.38
RTP_01242018_0_2um_scaffold_6905
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1596 bp 60.65 4.89 101.69
RTP_01242018_0_2um_scaffold_8322
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1413 bp 62.14 6.26 91.93
RTP_01242018_0_2um_scaffold_5729
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1824 bp 63.16 6.25 93.75
RTP_01242018_0_2um_scaffold_13373
Species: Thiobacillus denitrificans (66.67%)
3 1065 bp 58.78 4.08 91.55
RTP_01242018_0_2um_scaffold_5474
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1896 bp 58.70 4.67 93.04
RTP_01242018_0_2um_scaffold_7290
Order: Hydrogenophilales (66.67%)
3 1543 bp 60.34 5.74 91.38
RTP_01242018_0_2um_scaffold_4340
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2302 bp 56.43 5.08 91.75
RTP_01242018_0_2um_scaffold_12013
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1136 bp 65.85 4.23 89.26
RTP_01242018_0_2um_scaffold_8329
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1412 bp 56.02 5.10 85.20
RTP_01242018_0_2um_scaffold_13122
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1078 bp 62.52 6.40 93.78
RTP_01242018_0_2um_scaffold_6146
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1736 bp 59.91 5.79 67.05
RTP_01242018_0_2um_scaffold_6914
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1595 bp 65.33 5.55 100.06
RTP_01242018_0_2um_scaffold_7296
Order: Hydrogenophilales (66.67%)
3 1542 bp 58.88 2.82 89.88
RTP_01242018_0_2um_scaffold_9564
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1298 bp 58.94 3.81 98.00
RTP_01242018_0_2um_scaffold_13636
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1052 bp 58.56 3.99 104.66
RTP_01242018_0_2um_scaffold_14625
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1008 bp 64.78 4.32 103.27
RTP_01242018_0_2um_scaffold_9309
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1320 bp 58.11 4.66 94.77
RTP_01242018_0_2um_scaffold_7810
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1472 bp 62.57 5.10 99.86
RTP_01242018_0_2um_scaffold_4090
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2425 bp 66.02 5.57 83.13
RTP_01242018_0_2um_scaffold_11542
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1163 bp 63.71 5.80 99.57
RTP_01242018_0_2um_scaffold_11798
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1148 bp 59.67 6.93 100.61
RTP_01242018_0_2um_scaffold_14627
Order: Hydrogenophilales (66.67%)
3 1008 bp 59.42 5.65 84.82
RTP_01242018_0_2um_scaffold_6407
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1683 bp 66.55 4.19 95.90
RTP_01242018_0_2um_scaffold_4093
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 2424 bp 63.37 4.89 99.88
RTP_01242018_0_2um_scaffold_9313
Species: Thiobacillus denitrificans (66.67%)
3 1320 bp 61.52 3.64 84.32
RTP_01242018_0_2um_scaffold_12534
Species: GWE1_Thiobacillus_62_9_curated (100%)
3 1108 bp 52.53 4.87 97.74
RTP_01242018_0_2um_scaffold_5231
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1977 bp 62.52 6.53 93.63
RTP_01242018_0_2um_scaffold_6412
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1683 bp 58.11 4.63 89.13
RTP_01242018_0_2um_scaffold_3781
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2602 bp 65.53 4.04 92.81
RTP_01242018_0_2um_scaffold_9318
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1319 bp 59.89 4.09 92.34
RTP_01242018_0_2um_scaffold_7052
Order: Hydrogenophilales (66.67%)
3 1577 bp 63.92 4.95 87.70
RTP_01242018_0_2um_scaffold_10624
Order: Hydrogenophilales (66.67%)
3 1221 bp 56.35 2.70 71.99
RTP_01242018_0_2um_scaffold_6928
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1593 bp 53.92 5.84 91.53
RTP_01242018_0_2um_scaffold_3017
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 3239 bp 64.09 6.11 90.95
RTP_01242018_0_2um_scaffold_10113
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1256 bp 58.20 7.40 98.89
RTP_01242018_0_2um_scaffold_7310
Order: Hydrogenophilales (100%)
3 1540 bp 56.88 4.77 90.39
RTP_01242018_0_2um_scaffold_4614
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2184 bp 65.48 6.39 87.23
RTP_01242018_0_2um_scaffold_7311
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1540 bp 58.96 6.23 75.39
RTP_01242018_0_2um_scaffold_11043
Order: Hydrogenophilales (100%)
3 1193 bp 56.92 5.66 99.83
RTP_01242018_0_2um_scaffold_8860
Species: GWE1_Thiobacillus_62_9_curated (100%)
3 1358 bp 57.00 4.09 98.53
RTP_01242018_0_2um_scaffold_5753
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1819 bp 61.02 6.35 98.46
Displaying items 301-350 of 1197 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.