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RTP_01242018_0_2um_Hydrogenophilales_61_5

RTP_01242018_0_2um_RIFOXYD1_FULL_Hydrogenophilales_62_11_curated_61_5
In projects: RTP_01242018_0_2um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated  →  Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 351-400 of 1197 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_01242018_0_2um_scaffold_6422
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1681 bp 61.93 6.16 95.30
RTP_01242018_0_2um_scaffold_7571
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1505 bp 61.06 3.59 81.53
RTP_01242018_0_2um_scaffold_3023
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 3233 bp 61.46 5.29 90.19
RTP_01242018_0_2um_scaffold_4108
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 2420 bp 62.69 3.35 87.02
RTP_01242018_0_2um_scaffold_5502
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1889 bp 65.11 5.88 95.77
RTP_01242018_0_2um_scaffold_3794
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2591 bp 60.98 5.85 86.72
RTP_01242018_0_2um_scaffold_9330
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1318 bp 57.51 5.46 99.01
RTP_01242018_0_2um_scaffold_7831
Species: GWE1_Thiobacillus_62_9_curated (100%)
3 1469 bp 58.34 5.51 95.78
RTP_01242018_0_2um_scaffold_6427
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1680 bp 61.31 5.45 90.18
RTP_01242018_0_2um_scaffold_3541
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 2786 bp 59.22 7.91 98.85
RTP_01242018_0_2um_scaffold_7835
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1468 bp 62.26 5.72 96.25
RTP_01242018_0_2um_scaffold_4371
Species: GWE1_Thiobacillus_62_9_curated (100%)
3 2287 bp 59.20 4.66 96.94
RTP_01242018_0_2um_scaffold_3799
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2588 bp 63.18 5.91 89.84
RTP_01242018_0_2um_scaffold_10639
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1220 bp 60.90 2.58 101.56
RTP_01242018_0_2um_scaffold_11568
Order: Hydrogenophilales (100%)
3 1161 bp 58.40 5.30 86.56
RTP_01242018_0_2um_scaffold_2713
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 3660 bp 58.01 5.20 70.00
RTP_01242018_0_2um_scaffold_12815
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1093 bp 61.30 6.18 88.66
RTP_01242018_0_2um_scaffold_6180
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1730 bp 57.23 5.20 88.96
RTP_01242018_0_2um_scaffold_3040
Order: Hydrogenophilales (66.67%)
3 3219 bp 61.73 5.31 84.53
RTP_01242018_0_2um_scaffold_4895
Order: Hydrogenophilales (100%)
3 2088 bp 58.00 6.18 92.39
RTP_01242018_0_2um_scaffold_6444
Species: Thiobacillus denitrificans (100%)
3 1677 bp 57.42 6.98 90.52
RTP_01242018_0_2um_scaffold_6956
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1589 bp 58.72 6.42 91.57
RTP_01242018_0_2um_scaffold_6703
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1627 bp 65.40 5.44 92.38
RTP_01242018_0_2um_scaffold_5268
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1961 bp 59.71 5.28 77.87
RTP_01242018_0_2um_scaffold_5524
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1881 bp 61.94 4.31 100.80
RTP_01242018_0_2um_scaffold_6192
Species: GWE1_Thiobacillus_62_9_curated (100%)
3 1729 bp 58.24 7.03 88.49
RTP_01242018_0_2um_scaffold_5526
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1880 bp 62.50 4.47 93.51
RTP_01242018_0_2um_scaffold_5782
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1813 bp 62.00 5.38 86.38
RTP_01242018_0_2um_scaffold_4135
Order: Hydrogenophilales (66.67%)
3 2403 bp 53.14 3.25 93.38
RTP_01242018_0_2um_scaffold_3564
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2771 bp 63.44 8.12 94.62
RTP_01242018_0_2um_scaffold_4906
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2084 bp 62.43 5.18 99.18
RTP_01242018_0_2um_scaffold_11590
Order: Hydrogenophilales (100%)
3 1160 bp 59.31 4.66 88.71
RTP_01242018_0_2um_scaffold_5531
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1878 bp 57.45 4.71 82.27
RTP_01242018_0_2um_scaffold_6712
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1626 bp 65.07 5.72 95.94
RTP_01242018_0_2um_scaffold_8897
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1354 bp 62.56 6.09 89.07
RTP_01242018_0_2um_scaffold_5278
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1957 bp 61.06 4.91 97.19
RTP_01242018_0_2um_scaffold_5536
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1877 bp 54.50 3.60 96.70
RTP_01242018_0_2um_scaffold_4400
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2273 bp 66.87 6.40 99.65
RTP_01242018_0_2um_scaffold_3316
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2993 bp 63.72 6.52 93.92
RTP_01242018_0_2um_scaffold_8388
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1406 bp 59.82 5.44 94.31
RTP_01242018_0_2um_scaffold_4401
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2273 bp 53.81 5.54 95.03
RTP_01242018_0_2um_scaffold_13440
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1062 bp 59.23 5.51 87.01
RTP_01242018_0_2um_scaffold_7101
Order: Hydrogenophilales (66.67%)
3 1569 bp 55.00 4.21 85.09
RTP_01242018_0_2um_scaffold_4917
Order: Hydrogenophilales (66.67%)
3 2080 bp 61.35 6.63 94.18
RTP_01242018_0_2um_scaffold_6210
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1724 bp 57.42 5.39 87.01
RTP_01242018_0_2um_scaffold_7359
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1534 bp 60.30 6.55 94.65
RTP_01242018_0_2um_scaffold_11859
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1145 bp 57.82 4.06 96.94
RTP_01242018_0_2um_scaffold_4920
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2079 bp 60.70 6.93 96.83
RTP_01242018_0_2um_scaffold_3581
Species: Thiobacillus denitrificans (100%)
3 2756 bp 60.49 6.42 97.97
RTP_01242018_0_2um_scaffold_8653
Order: Hydrogenophilales (66.67%)
3 1377 bp 64.27 7.41 100.22
Displaying items 351-400 of 1197 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.