ggKbase home page

RTP_01242018_0_2um_Hydrogenophilales_61_5

RTP_01242018_0_2um_RIFOXYD1_FULL_Hydrogenophilales_62_11_curated_61_5
In projects: RTP_01242018_0_2um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated  →  Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 251-300 of 1197 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_01242018_0_2um_scaffold_14143
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1029 bp 65.31 4.37 100.29
RTP_01242018_0_2um_scaffold_12066
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1133 bp 59.66 4.37 83.67
RTP_01242018_0_2um_scaffold_9122
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1336 bp 63.40 4.38 100.15
RTP_01242018_0_2um_scaffold_9135
Species: GWE1_Thiobacillus_62_9_curated (100%)
3 1335 bp 52.28 4.38 73.03
RTP_01242018_0_2um_scaffold_10439
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1234 bp 60.94 4.38 87.52
RTP_01242018_0_2um_scaffold_12106
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1131 bp 63.22 4.38 100.27
RTP_01242018_0_2um_scaffold_6099
Species: GWE1_Thiobacillus_62_9_curated (100%)
1 1744 bp 65.88 4.39 99.77
RTP_01242018_0_2um_scaffold_9193
Species: GWE1_Thiobacillus_62_9_curated (100%)
1 1330 bp 56.62 4.40 99.92
RTP_01242018_0_2um_scaffold_14262
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1023 bp 57.58 4.40 99.71
RTP_01242018_0_2um_scaffold_10077
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1258 bp 48.57 4.41 64.63
RTP_01242018_0_2um_scaffold_7660
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1495 bp 59.93 4.41 97.12
RTP_01242018_0_2um_scaffold_8498
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1394 bp 62.12 4.41 100.29
RTP_01242018_0_2um_scaffold_13651
Species: Thiobacillus denitrificans (100%)
1 1052 bp 59.70 4.42 99.81
RTP_01242018_0_2um_scaffold_9264
Order: Hydrogenophilales (66.67%)
3 1324 bp 52.49 4.42 91.16
RTP_01242018_0_2um_scaffold_9267
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1324 bp 66.16 4.42 100.38
RTP_01242018_0_2um_scaffold_10655
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1219 bp 67.43 4.43 99.67
RTP_01242018_0_2um_scaffold_13712
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1049 bp 58.25 4.43 63.49
RTP_01242018_0_2um_scaffold_3790
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
6 2593 bp 59.47 4.45 90.71
RTP_01242018_0_2um_scaffold_3834
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 2564 bp 64.47 4.45 96.53
RTP_01242018_0_2um_scaffold_2842
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 3470 bp 59.94 4.45 88.53
RTP_01242018_0_2um_scaffold_5396
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 1921 bp 57.05 4.45 88.86
RTP_01242018_0_2um_scaffold_12513
Species: Thiobacillus denitrificans (50%)
2 1109 bp 59.78 4.46 91.43
RTP_01242018_0_2um_scaffold_5526
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1880 bp 62.50 4.47 93.51
RTP_01242018_0_2um_scaffold_10302
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1243 bp 62.67 4.47 99.92
RTP_01242018_0_2um_scaffold_7772
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1477 bp 65.81 4.47 94.25
RTP_01242018_0_2um_scaffold_10876
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
1 1204 bp 69.44 4.49 87.21
RTP_01242018_0_2um_scaffold_5136
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 2005 bp 66.13 4.49 97.86
RTP_01242018_0_2um_scaffold_12070
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1133 bp 64.25 4.50 83.67
RTP_01242018_0_2um_scaffold_7365
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1533 bp 57.40 4.50 93.54
RTP_01242018_0_2um_scaffold_4514
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2233 bp 59.83 4.50 87.19
RTP_01242018_0_2um_scaffold_13344
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1066 bp 52.53 4.50 99.34
RTP_01242018_0_2um_scaffold_6889
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1598 bp 59.20 4.51 99.87
RTP_01242018_0_2um_scaffold_7386
Order: Hydrogenophilales (50%)
4 1531 bp 60.74 4.51 92.68
RTP_01242018_0_2um_scaffold_12125
Species: Thiobacillus denitrificans (50%)
2 1130 bp 60.80 4.51 93.98
RTP_01242018_0_2um_scaffold_7155
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1562 bp 62.23 4.51 100.26
RTP_01242018_0_2um_scaffold_9984
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1265 bp 63.32 4.51 98.66
RTP_01242018_0_2um_scaffold_3542
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 2785 bp 59.61 4.52 89.41
RTP_01242018_0_2um_scaffold_13408
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1063 bp 56.73 4.52 44.87
RTP_01242018_0_2um_scaffold_2488
Order: Hydrogenophilales (100%)
9 4086 bp 63.26 4.52 82.16
RTP_01242018_0_2um_scaffold_7664
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1494 bp 62.05 4.52 97.79
RTP_01242018_0_2um_scaffold_6035
Species: RBG_16_Betaproteobacteria_58_11_curated (50%)
2 1758 bp 56.88 4.52 99.32
RTP_01242018_0_2um_scaffold_8798
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1362 bp 61.16 4.52 89.65
RTP_01242018_0_2um_scaffold_2440
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 4168 bp 60.48 4.53 86.73
RTP_01242018_0_2um_scaffold_11627
Species: Thiobacillus denitrificans (100%)
1 1158 bp 64.25 4.53 89.90
RTP_01242018_0_2um_scaffold_13489
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1060 bp 64.15 4.53 88.30
RTP_01242018_0_2um_scaffold_4460
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2250 bp 60.84 4.53 93.33
RTP_01242018_0_2um_scaffold_4797
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 2119 bp 55.73 4.53 89.33
RTP_01242018_0_2um_scaffold_10575
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1225 bp 55.02 4.53 81.31
RTP_01242018_0_2um_scaffold_12896
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1090 bp 57.25 4.54 80.92
RTP_01242018_0_2um_scaffold_6565
Order: Hydrogenophilales (66.67%)
3 1653 bp 60.74 4.54 88.75
Displaying items 251-300 of 1197 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.