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RTP_01242018_0_2um_Hydrogenophilales_61_5

RTP_01242018_0_2um_RIFOXYD1_FULL_Hydrogenophilales_62_11_curated_61_5
In projects: RTP_01242018_0_2um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated  →  Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 301-350 of 1197 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_01242018_0_2um_scaffold_7238
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1552 bp 58.44 4.54 93.94
RTP_01242018_0_2um_scaffold_6250
Species: Thiobacillus denitrificans (100%)
2 1716 bp 56.99 4.55 96.15
RTP_01242018_0_2um_scaffold_11131
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1187 bp 56.70 4.55 66.98
RTP_01242018_0_2um_scaffold_3680
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 2669 bp 58.11 4.55 99.59
RTP_01242018_0_2um_scaffold_8256
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1419 bp 61.10 4.55 86.47
RTP_01242018_0_2um_scaffold_8960
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1350 bp 61.78 4.56 82.44
RTP_01242018_0_2um_scaffold_11776
Species: GWE1_Thiobacillus_62_9_curated (100%)
1 1150 bp 62.26 4.57 99.91
RTP_01242018_0_2um_scaffold_8343
Species: Thiobacillus denitrificans (50%)
2 1411 bp 66.41 4.57 99.29
RTP_01242018_0_2um_scaffold_12332
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1117 bp 61.77 4.57 99.10
RTP_01242018_0_2um_scaffold_13009
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1084 bp 61.72 4.57 92.16
RTP_01242018_0_2um_scaffold_8022
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1444 bp 64.13 4.57 100.97
RTP_01242018_0_2um_scaffold_9045
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1342 bp 57.68 4.58 88.52
RTP_01242018_0_2um_scaffold_11824
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1147 bp 65.39 4.58 99.91
RTP_01242018_0_2um_scaffold_13118
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 1078 bp 65.86 4.59 100.19
RTP_01242018_0_2um_scaffold_13769
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
3 1046 bp 58.03 4.59 91.49
RTP_01242018_0_2um_scaffold_14526
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1012 bp 57.71 4.59 84.49
RTP_01242018_0_2um_scaffold_12488
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1110 bp 63.24 4.59 93.24
RTP_01242018_0_2um_scaffold_11363
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1173 bp 59.51 4.60 92.07
RTP_01242018_0_2um_scaffold_13817
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1044 bp 58.52 4.60 90.52
RTP_01242018_0_2um_scaffold_9497
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1303 bp 63.24 4.60 87.95
RTP_01242018_0_2um_scaffold_13847
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1043 bp 65.68 4.60 85.43
RTP_01242018_0_2um_scaffold_2438
Order: Hydrogenophilales (66.67%)
6 4169 bp 61.09 4.61 91.24
RTP_01242018_0_2um_scaffold_10892
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1203 bp 59.27 4.61 70.82
RTP_01242018_0_2um_scaffold_8140
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 1431 bp 60.45 4.61 96.02
RTP_01242018_0_2um_scaffold_3341
Species: Thiobacillus denitrificans (75%)
4 2964 bp 62.38 4.61 92.11
RTP_01242018_0_2um_scaffold_11979
Order: Hydrogenophilales (66.67%)
3 1139 bp 57.33 4.61 87.71
RTP_01242018_0_2um_scaffold_9553
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1299 bp 64.36 4.62 98.38
RTP_01242018_0_2um_scaffold_12014
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1136 bp 64.26 4.62 97.18
RTP_01242018_0_2um_scaffold_12618
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1104 bp 64.49 4.62 94.57
RTP_01242018_0_2um_scaffold_10465
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1233 bp 69.34 4.62 100.24
RTP_01242018_0_2um_scaffold_11424
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1169 bp 63.39 4.62 100.09
RTP_01242018_0_2um_scaffold_3947
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 2501 bp 63.77 4.62 95.12
RTP_01242018_0_2um_scaffold_6412
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1683 bp 58.11 4.63 89.13
RTP_01242018_0_2um_scaffold_5237
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 1975 bp 58.28 4.63 100.71
RTP_01242018_0_2um_scaffold_4348
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 2297 bp 60.17 4.64 95.34
RTP_01242018_0_2um_scaffold_8209
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1423 bp 61.42 4.64 96.35
RTP_01242018_0_2um_scaffold_7043
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1579 bp 59.66 4.65 101.46
RTP_01242018_0_2um_scaffold_7950
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1453 bp 63.32 4.65 110.46
RTP_01242018_0_2um_scaffold_12161
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1128 bp 61.17 4.65 77.93
RTP_01242018_0_2um_scaffold_4063
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2444 bp 63.67 4.66 99.43
RTP_01242018_0_2um_scaffold_9309
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1320 bp 58.11 4.66 94.77
RTP_01242018_0_2um_scaffold_4371
Species: GWE1_Thiobacillus_62_9_curated (100%)
3 2287 bp 59.20 4.66 96.94
RTP_01242018_0_2um_scaffold_11590
Order: Hydrogenophilales (100%)
3 1160 bp 59.31 4.66 88.71
RTP_01242018_0_2um_scaffold_11082
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1190 bp 61.26 4.66 80.17
RTP_01242018_0_2um_scaffold_5474
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1896 bp 58.70 4.67 93.04
RTP_01242018_0_2um_scaffold_4237
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 2347 bp 63.53 4.67 94.72
RTP_01242018_0_2um_scaffold_6674
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
1 1633 bp 58.05 4.68 97.00
RTP_01242018_0_2um_scaffold_10650
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1219 bp 60.79 4.68 100.16
RTP_01242018_0_2um_scaffold_3357
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 2948 bp 59.43 4.68 80.19
RTP_01242018_0_2um_scaffold_13538
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1057 bp 59.98 4.68 95.93
Displaying items 301-350 of 1197 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.