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RTP_02272018_0_2um_scaffold_339

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_339_1

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1..207
DNA (207bp) protein (69aa)
Oxaloacetate decarboxylase alpha chain {ECO:0000313|EMBL:CBI09550.1}; EC=4.1.1.3 {ECO:0000313|EMBL:CBI09550.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Oxaloacetate decarboxylase alpha chain n=1 Tax=mine drainage metagenome RepID=E6QQM9_9ZZZZ
pyruvate carboxylase subunit B
RTP_02272018_0_2um_scaffold_339_2
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

214..807
DNA (594bp) protein (198aa)
Maf-like protein SCD_n01541 n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AC85_9PROT
Maf-like protein SCT_2662 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
maf protein, putative
RTP_02272018_0_2um_scaffold_339_3
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(845..2905)
DNA (2061bp) protein (687aa)
polyphosphate kinase (EC:2.7.4.1); K00937 polyphosphate kinase [EC:2.7.4.1] id=12497277 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
polyphosphate kinase (EC:2.7.4.1)
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_339_4
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2962..3582
DNA (621bp) protein (207aa)
CHAD domain-containing protein n=1 Tax=Marinobacterium stanieri RepID=UPI000255993E
adenylate cyclase
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_339_5

Not on your lists

3627..4079
DNA (453bp) protein (151aa)
Phosphohistidine phosphatase, SixA n=1 Tax=mine drainage metagenome RepID=E6QTK4_9ZZZZ
Phosphohistidine phosphatase, SixA {ECO:0000313|EMBL:CBI10576.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
phosphohistidine phosphatase SixA
RTP_02272018_0_2um_scaffold_339_6
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4173..4622
DNA (450bp) protein (150aa)
Dihydroneopterin triphosphate pyrophosphatase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBG0_NITMU
ntpA; dATP pyrophosphohydrolase
Dihydroneopterin triphosphate pyrophosphatase {ECO:0000313|EMBL:ABB73911.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
RTP_02272018_0_2um_scaffold_339_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4609..4956
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CF2A1
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_339_8
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5057..7549)
DNA (2493bp) protein (831aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
phosphorylase (EC:2.4.1.1)
Phosphorylase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BUJ9_9GAMM
RTP_02272018_0_2um_scaffold_339_9

Not on your lists

comp(7546..9021)
DNA (1476bp) protein (492aa)
Glycogen synthase {ECO:0000313|EMBL:CBI10948.1}; EC=2.4.1.21 {ECO:0000313|EMBL:CBI10948.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Glycogen synthase n=1 Tax=mine drainage metagenome RepID=E6QUM5_9ZZZZ
glycogen/starch synthase, ADP-glucose type
RTP_02272018_0_2um_scaffold_339_10
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9023..11191)
DNA (2169bp) protein (723aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
glycogen branching enzyme (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BUK1_9GAMM
RTP_02272018_0_2um_scaffold_339_11

Not on your lists

comp(11191..12549)
DNA (1359bp) protein (453aa)
4-alpha-glucanotransferase (Amylomaltase) (Disproportionating enzyme) (D-enzyme) {ECO:0000313|EMBL:CBI10950.1}; EC=2.4.1.25 {ECO:0000313|EMBL:CBI10950.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase (Amylomaltase) (Disproportionating enzyme) (D-enzyme) n=1 Tax=mine drainage metagenome RepID=E6QUM7_9ZZZZ
RTP_02272018_0_2um_scaffold_339_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12546..14267)
DNA (1722bp) protein (574aa)
Glycosyl hydrolase family 57 id=1332708 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
glycosyl hydrolase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_339_13

Not on your lists

comp(14285..15580)
DNA (1296bp) protein (432aa)
Glucose-1-phosphate adenylyltransferase (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (ADPGlc PPase) {ECO:0000313|EMBL:CBI10952.1}; EC=2.7.7.27 {ECO:0000313|EMBL:CBI10952.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
glgC; glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (ADPGlc PPase) n=1 Tax=mine drainage metagenome RepID=E6QUM9_9ZZZZ
RTP_02272018_0_2um_scaffold_339_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15697..16719)
DNA (1023bp) protein (341aa)
glucokinase (EC:2.7.1.2)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000368649C
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_339_15
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16906..17142
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Calothrix sp. PCC 7103 RepID=UPI00036A6734
FeoA family protein
Tax=GWA2_Gallionellales_60_18_curated
RTP_02272018_0_2um_scaffold_339_16
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17139..18926
DNA (1788bp) protein (596aa)
Ferrous iron transport protein B n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BRX9_9GAMM
ferrous iron transport protein B
Tax=CG_Hydro_01
RTP_02272018_0_2um_scaffold_339_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19002..19607
DNA (606bp) protein (202aa)
Probable exbB-like biopolymer transport n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIR2_THIDA
exbB-like biopolymer transport
Probable exbB-like biopolymer transport {ECO:0000313|EMBL:AAZ97463.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_339_18
Gallionella capsiferriformans, Gallionella, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19619..20035
DNA (417bp) protein (139aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SD13_GALCS
biopolymer transport protein ExbD/TolR
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:ADL54702.1}; TaxID=395494 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Gallionella.;" source="Gallionella capsiferriformans (strain ES-2) (Gallionella ferruginea; capsiferriformans (strain ES-2)).;"
RTP_02272018_0_2um_scaffold_339_19
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20076..21167
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00036441BA
Uncharacterized protein {ECO:0000313|EMBL:KFZ91358.1}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_339_20
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21161..22165
DNA (1005bp) protein (335aa)
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093884}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
Tetraacyldisaccharide 4'-kinase n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QJS2_METS6
lpxK; tetraacyldisaccharide 4'-kinase
RTP_02272018_0_2um_scaffold_339_21
BJP_IG2158_Methylococcales_50_91, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22158..22337
DNA (180bp) protein (60aa)
UPF0434 protein n=1 Tax=uncultured bacterium 9F08 RepID=D2XIQ7_9BACT
conserved hypothetical protein
Tax=BJP_IG2158_Methylococcales_50_91
RTP_02272018_0_2um_scaffold_339_22
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22337..23098
DNA (762bp) protein (254aa)
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=KDSB_METFK
Tax=BJP_S1_SUB10_Methylophilales_55_32
RTP_02272018_0_2um_scaffold_339_23
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23105..23761
DNA (657bp) protein (219aa)
adk; adenylate kinase (EC:2.7.4.3)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
adenylate kinase n=1 Tax=Thiobacillus thioparus RepID=UPI0003760FF0
RTP_02272018_0_2um_scaffold_339_24
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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23992..25335
DNA (1344bp) protein (448aa)
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AJY5_9PROT
rumA; 23S rRNA 5-methyluridine methyltransferase
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_339_25

Not on your lists

comp(25332..26144)
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QWY7_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI11761.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
signal transduction protein
RTP_02272018_0_2um_scaffold_339_26
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26285..26974
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9X9_9PROT
Membrane protein {ECO:0000313|EMBL:GAO36029.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_339_27

Not on your lists

comp(27001..27846)
DNA (846bp) protein (282aa)
N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2 {ECO:0000313|EMBL:CBI09289.1}; EC=2.1.1.- {ECO:0000313|EMBL:CBI09289.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2 n=1 Tax=mine drainage metagenome RepID=E6QPW8_9ZZZZ
protein-(glutamine-N5) methyltransferase, release factor-specific
RTP_02272018_0_2um_scaffold_339_28
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27852..28928)
DNA (1077bp) protein (359aa)
Peptide chain release factor 1 n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0FXZ5_9BURK
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
prfA; peptide chain release factor 1
RTP_02272018_0_2um_scaffold_339_29

Not on your lists

comp(28925..30175)
DNA (1251bp) protein (417aa)
Glutamyl-tRNA reductase (GluTR) {ECO:0000313|EMBL:CBI09291.1}; EC=1.2.1.70 {ECO:0000313|EMBL:CBI09291.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Glutamyl-tRNA reductase (GluTR) n=1 Tax=mine drainage metagenome RepID=E6QPX0_9ZZZZ
hemA; glutamyl-tRNA reductase
RTP_02272018_0_2um_scaffold_339_30
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30179..33442)
DNA (3264bp) protein (1088aa)
transmembrane protein id=12496435 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
transmembrane protein
Tax=CG_Hydro_01
Displaying items 1-30 of 45 in total

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