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RTP_02272018_0_2um_scaffold_471

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Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_471_1
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..554
-----------------
DNA (552bp)
protein (184aa)
Putative signal peptide protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TL02_ACIAC
putative signal peptide protein
Putative signal peptide protein {ECO:0000313|EMBL:ABM31640.1}; Flags: Precursor;; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
RTP_02272018_0_2um_scaffold_471_2
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

517..4137
-----------------
DNA (3621bp)
protein (1207aa)
hypothetical protein n=1 Tax=Methyloversatilis universalis RepID=UPI00037E175E
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:EGK71443.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
hypothetical protein
RTP_02272018_0_2um_scaffold_471_3
Burkholderiaceae bacterium 26, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4158..4670
-----------------
DNA (513bp)
protein (171aa)
Lipoprotein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IUI3_HERSS
Transporter {ECO:0000313|EMBL:KJJ94944.1}; TaxID=1619951 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 26.;"
lipoprotein
RTP_02272018_0_2um_scaffold_471_4

Not on your lists

4667..6004
-----------------
DNA (1338bp)
protein (446aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EEK9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE16996.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_471_5
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5988..6989
-----------------
DNA (1002bp)
protein (334aa)
Putative transmembrane protein n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5REW5_9RHOO
Putative transmembrane protein {ECO:0000313|EMBL:EGK71446.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
hypothetical protein
RTP_02272018_0_2um_scaffold_471_6
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6986..8491
-----------------
DNA (1506bp)
protein (502aa)
Glycosyltransferase protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IUI0_HERSS
glycosyltransferase
Glycosyltransferase protein {ECO:0000313|EMBL:ADJ65712.1}; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
RTP_02272018_0_2um_scaffold_471_7
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8491..9864
-----------------
DNA (1374bp)
protein (458aa)
Uncharacterized protein n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LFP8_RALME
pelG; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF11028.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
RTP_02272018_0_2um_scaffold_471_8
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9904..11004)
-----------------
DNA (1101bp)
protein (367aa)
aroC; chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Chorismate synthase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABH0_9PROT
RTP_02272018_0_2um_scaffold_471_9
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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11181..12140
-----------------
DNA (960bp)
protein (320aa)
dehydrogenase complex, E1 component subunit alpha; K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] id=12498119 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
dehydrogenase complex, E1 component subunit alpha
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_471_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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12192..13175
-----------------
DNA (984bp)
protein (328aa)
pyruvate dehydrogenase subunit beta n=1 Tax=Thiobacillus thioparus RepID=UPI0003720846
pyruvate dehydrogenase E1 subunit beta
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_471_11

Not on your lists

13244..16189
-----------------
DNA (2946bp)
protein (982aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase E3 component n=1 Tax=mine drainage metagenome RepID=E6QRY4_9ZZZZ
Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase E3 component {ECO:0000313|EMBL:CBI10006.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RTP_02272018_0_2um_scaffold_471_12
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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16261..17277
-----------------
DNA (1017bp)
protein (339aa)
pyrD; dihydroorotate dehydrogenase 2 (EC:1.3.3.1)
Dihydroorotate dehydrogenase (Dihydroorotate oxidase) (DHOdehase) (DHODase) (DHOD) n=1 Tax=mine drainage metagenome RepID=E6QU29_9ZZZZ
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
RTP_02272018_0_2um_scaffold_471_13
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17250..18962
-----------------
DNA (1713bp)
protein (571aa)
Penicillin-binding protein 1C {ECO:0000313|EMBL:ELX09880.1}; EC=2.4.2.- {ECO:0000313|EMBL:ELX09880.1};; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
Multimodular transpeptidase-transglycosylase (EC:2.4.1.129)
Penicillin-binding protein 1C n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PDX9_9BURK
RTP_02272018_0_2um_scaffold_471_14
RifOxyB12_full_Sideroxydans_59_6_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19043..19624
-----------------
DNA (582bp)
protein (194aa)
electron transport complex RsxE subunit n=1 Tax=Thiobacillus thioparus RepID=UPI0003814AA2
RnfABCDGE type electron transport complex subunit A
Tax=RifOxyB12_full_Sideroxydans_59_6_curated
RTP_02272018_0_2um_scaffold_471_15
Thauera sp. MZ1T, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19624..20175
-----------------
DNA (552bp)
protein (184aa)
Electron transport complex protein RnfB n=2 Tax=Thauera RepID=C4KBU7_THASP
electron transport complex protein RnfB
Electron transport complex subunit B {ECO:0000256|HAMAP-Rule:MF_00463}; TaxID=85643 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. (strain MZ1T).;"
RTP_02272018_0_2um_scaffold_471_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20172..21725
-----------------
DNA (1554bp)
protein (518aa)
electron transporter RnfC n=1 Tax=Thiobacillus denitrificans RepID=UPI00036006DA
electron transport complex protein RnfC
Electron transport complex subunit C {ECO:0000256|HAMAP-Rule:MF_00461}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_471_17
R_Methylophilales_57_10, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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21722..22744
-----------------
DNA (1023bp)
protein (341aa)
Putative inner membrane oxidoreductase n=1 Tax=mine drainage metagenome RepID=E6QNE1_9ZZZZ
rsxD; putative inner membrane oxidoreductase
Tax=RIFCSPHIGHO2_02_FULL_Methylophilales_57_10_curated
RTP_02272018_0_2um_scaffold_471_18
Gallionella capsiferriformans, Gallionella, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22741..23379
-----------------
DNA (639bp)
protein (213aa)
Electron transport complex, RnfABCDGE type, G subunit n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SJI1_GALCS
RnfABCDGE type electron transport complex subunit G
Electron transport complex subunit G {ECO:0000256|HAMAP-Rule:MF_00479}; Flags: Precursor;; TaxID=395494 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Gallionella.;" source="Gallionella capsiferriformans (strain ES-2) (Gallionella ferruginea; capsiferriformans (strain ES-2)).;"
RTP_02272018_0_2um_scaffold_471_19
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23376..24050
-----------------
DNA (675bp)
protein (225aa)
electron transporter RsxE n=1 Tax=Thiobacillus thioparus RepID=UPI000372F93D
Electron transport complex subunit E {ECO:0000256|HAMAP-Rule:MF_00478}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
electron transport complex, RnfABCDGE type, E subunit
RTP_02272018_0_2um_scaffold_471_20
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24150..24599)
-----------------
DNA (450bp)
protein (150aa)
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI00037A984E
Uncharacterized protein {ECO:0000313|EMBL:KDN95882.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_471_21
Salinispira pacifica, Salinispira, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(24596..25096)
-----------------
DNA (501bp)
protein (167aa)
Putative transmembrane protein n=1 Tax=Spirochaeta sp. L21-RPul-D2 RepID=V5WL90_9SPIO
putative transmembrane protein
Salinispira pacifica strain L21-RPul-D2, complete genome {ECO:0000313|EMBL:AHC16582.1}; TaxID=1307761 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Salinispira.;" source="Salinispira pacifica.;"
RTP_02272018_0_2um_scaffold_471_22
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25152..26909)
-----------------
DNA (1758bp)
protein (586aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BRE6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EDN70891.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
5'-nucleotidase/2' 3'-cyclic phosphodiesterase
RTP_02272018_0_2um_scaffold_471_23
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26957..27379)
-----------------
DNA (423bp)
protein (141aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BRE8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EDN70893.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_471_24
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27400..29142)
-----------------
DNA (1743bp)
protein (581aa)
High affinity sulfate transporter SulP n=1 Tax=Beggiatoa sp. PS RepID=A7BVN0_9GAMM
High affinity sulfate transporter SulP {ECO:0000313|EMBL:EDN69404.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
sulfate transporter
RTP_02272018_0_2um_scaffold_471_25
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29142..30092)
-----------------
DNA (951bp)
protein (317aa)
Secreted protein n=1 Tax=Beggiatoa sp. PS RepID=A7BVN1_9GAMM
Secreted protein {ECO:0000313|EMBL:EDN69405.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
cytochrome c family protein
RTP_02272018_0_2um_scaffold_471_26
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30106..31020)
-----------------
DNA (915bp)
protein (305aa)
Secreted protein n=1 Tax=Beggiatoa sp. PS RepID=A7BVN1_9GAMM
Secreted protein {ECO:0000313|EMBL:EDN69405.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
cytochrome c
RTP_02272018_0_2um_scaffold_471_27
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31025..31828)
-----------------
DNA (804bp)
protein (268aa)
Cytochrome c4 n=1 Tax=Beggiatoa sp. PS RepID=A7C296_9GAMM
Cytochrome c4 {ECO:0000313|EMBL:EDN67087.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
cytochrome C
RTP_02272018_0_2um_scaffold_471_28
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31913..33736)
-----------------
DNA (1824bp)
protein (608aa)
Putative 5'-nucleotidase/2' 3'-cyclic phosphodiesterase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJC5_THIDA
5'-nucleotidase {ECO:0000313|EMBL:GAO37203.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
5'-nucleotidase/2' 3'-cyclic phosphodiesterase
RTP_02272018_0_2um_scaffold_471_29
Solemya velum gill symbiont, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33761..34543)
-----------------
DNA (783bp)
protein (261aa)
Putative uncharacterized protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WZG9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KHF25458.1}; TaxID=2340 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="Solemya velum gill symbiont.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_471_30
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(34567..36882)
-----------------
DNA (2316bp)
protein (772aa)
Putative uncharacterized protein n=1 Tax=endosymbiont of Riftia pachyptila (vent Ph05) RepID=G2DFM8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EGV50588.1}; TaxID=1048808 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Riftia pachyptila (vent Ph05).;"
conserved hypothetical protein
Displaying items 1-30 of 50 in total

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