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RTP_02272018_0_2um_scaffold_531

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_531_1
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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1..96
DNA (96bp) protein (32aa)
Probable Fe(2+)-trafficking protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=FETP_DECAR
hypothetical protein
Probable Fe(2+)-trafficking protein {ECO:0000255|HAMAP-Rule:MF_00686}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
RTP_02272018_0_2um_scaffold_531_2
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

473..1279
DNA (807bp) protein (269aa)
ABC-type phosphate/phosphonate transport system periplasmic component-like protein n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E9B6_GEOLS
phosphate/phosphonate ABC transporter periplasmic protein PhnD family protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_531_3
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1359..1904
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B114_9PROT
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_531_4
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1948..3186)
DNA (1239bp) protein (413aa)
diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Diaminopimelate decarboxylase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AZU0_9PROT
RTP_02272018_0_2um_scaffold_531_5

Not on your lists

3352..3666
DNA (315bp) protein (105aa)
Frataxin-like n=1 Tax=mine drainage metagenome RepID=E6QSE2_9ZZZZ
Frataxin-like {ECO:0000313|EMBL:CBI10164.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_531_6
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3887..4351
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003714F29
DoxX family protein
Tax=CG_Hydro_01
RTP_02272018_0_2um_scaffold_531_7
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4354..4917
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Methylophilus RepID=UPI00036E2007
ECF subfamily RNA polymerase sigma-24 subunit
Tax=CG_Hydro_01
RTP_02272018_0_2um_scaffold_531_8
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4920..5186
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Methylovulum miyakonense RepID=UPI0003701E41
hypothetical protein
Tax=CG_Hydro_01
RTP_02272018_0_2um_scaffold_531_9
unknown

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5228..5536
DNA (309bp) protein (103aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_531_10
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5676..6017
DNA (342bp) protein (114aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47B99_DECAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ47882.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
RTP_02272018_0_2um_scaffold_531_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6024..6869
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000377B5D0
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_531_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6841..7629
DNA (789bp) protein (263aa)
Putative uncharacterized protein id=1304137 bin=GWE1_T_denit_62_9 species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_531_13
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7687..9153
DNA (1467bp) protein (489aa)
Diguanylate phosphodiesterase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AHN2_9PROT
diguanylate phosphodiesterase
Tax=CG_Beta_01
RTP_02272018_0_2um_scaffold_531_14
Candidatus Methylopumilus turicensis, Candidatus Methylopumilus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9150..9707)
DNA (558bp) protein (186aa)
Molybdenum cofactor guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907}; Short=MoCo guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316};; EC=2.7.7.77 {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907};; GTP:molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Mo-MPT guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin-guanine dinucleotide synthase {ECO:0000256|HAMAP-Rule:MF_00316}; TaxID=1581680 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium MMS-10A-171.;"
Molybdenum cofactor guanylyltransferase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABB7_9PROT
mobA; molybdopterin-guanine dinucleotide synthase
RTP_02272018_0_2um_scaffold_531_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9694..11343)
DNA (1650bp) protein (550aa)
Transmembrane protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AJ43_9PROT
transmembrane protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
RTP_02272018_0_2um_scaffold_531_16
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11450..11659)
DNA (210bp) protein (70aa)
50S ribosomal protein L31 n=1 Tax=Methylophilus RepID=UPI00036AD673
rpmE; 50S ribosomal protein L31
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
RTP_02272018_0_2um_scaffold_531_trna_1
unknown

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11822..11895
DNA (74bp)
transferRNA Met
RTP_02272018_0_2um_scaffold_531_17

Not on your lists

12149..13408
DNA (1260bp) protein (420aa)
Putative Phage integrase n=1 Tax=mine drainage metagenome RepID=E6QX46_9ZZZZ
Putative Phage integrase {ECO:0000313|EMBL:CBI11820.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
integrase
RTP_02272018_0_2um_scaffold_531_18
unknown

Not on your lists

comp(13694..13948)
DNA (255bp) protein (85aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_531_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14016..14516)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003624E2E
outer membrane lipoprotein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_531_20
unknown

Not on your lists

comp(14526..14996)
DNA (471bp) protein (157aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_531_21
unknown

Not on your lists

comp(14993..15241)
DNA (249bp) protein (83aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_531_22
unknown

Not on your lists

comp(15238..15696)
DNA (459bp) protein (153aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_531_23

Not on your lists

comp(15943..17616)
DNA (1674bp) protein (558aa)
Type IV conjugative transfer system coupling protein TraD n=2 Tax=mine drainage metagenome RepID=T0ZZA0_9ZZZZ
Type IV conjugative transfer system coupling protein TraD {ECO:0000313|EMBL:EQD53571.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
type IV secretory pathway vird4 component
RTP_02272018_0_2um_scaffold_531_24
unknown

Not on your lists

comp(17613..17774)
DNA (162bp) protein (54aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_531_25
unknown

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comp(17774..18190)
DNA (417bp) protein (139aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_531_26
unknown

Not on your lists

comp(18220..18315)
DNA (96bp) protein (32aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_531_27
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18464..21319)
DNA (2856bp) protein (952aa)
Conjugative relaxase domain protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4X6_THIK1
conjugative relaxase domain-containing protein
Conjugative relaxase domain protein {ECO:0000313|EMBL:ADG29800.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
RTP_02272018_0_2um_scaffold_531_28
unknown

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comp(21333..21548)
DNA (216bp) protein (72aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_531_29
unknown

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comp(21575..21880)
DNA (306bp) protein (102aa)

This feature has no annotations

Displaying items 1-30 of 45 in total

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