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RTP_02272018_0_2um_scaffold_561

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_561_1
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..981)
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI00030B193B
Uncharacterized protein {ECO:0000313|EMBL:EAT08152.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
hypothetical protein
RTP_02272018_0_2um_scaffold_561_2
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1213..2517
DNA (1305bp) protein (435aa)
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:KHS43468.1}; EC=1.1.1.22 {ECO:0000313|EMBL:KHS43468.1};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
UDP-glucose 6-dehydrogenase (EC:1.1.1.22)
UDP-glucose 6-dehydrogenase n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B49ACA
RTP_02272018_0_2um_scaffold_561_3
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2571..3362)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Sphingomonas RepID=UPI0002882815
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
RTP_02272018_0_2um_scaffold_561_4
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3473..4840)
DNA (1368bp) protein (456aa)
cytochrome P450 n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B34F57
Cytochrome P450 {ECO:0000313|EMBL:KGB55219.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
cytochrome P450
RTP_02272018_0_2um_scaffold_561_5
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5041..5871
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBI4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KGB55818.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_561_6
Xenorhabdus bovienii, Xenorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7024..8175
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Acinetobacter sp. NIPH 298 RepID=N9LKH2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:CDH20999.1}; TaxID=1398203 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Xenorhabdus.;" source="Xenorhabdus bovienii str. kraussei Quebec.;"
RTP_02272018_0_2um_scaffold_561_7
Marinobacter sp. EN3, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8308..9414
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Marinobacter sp. EN3 RepID=U7HNP8_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:ERS11287.1}; TaxID=1397533 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. EN3.;"
RTP_02272018_0_2um_scaffold_561_8
Alishewanella aestuarii, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9483..10790
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Alishewanella aestuarii B11 RepID=J1Q3Q2_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:EJI85743.1}; TaxID=1197174 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alishewanella aestuarii B11.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_561_9
Chloroherpeton thalassium, Chloroherpeton, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

11354..11794
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Aeromonas aquariorum RepID=UPI00029A2F97
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACF14965.1}; TaxID=517418 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chloroherpeton.;" source="Chloroherpeton thalassium (strain ATCC 35110 / GB-78).;"
RTP_02272018_0_2um_scaffold_561_10
Thioalkalivibrio sp. K90mix, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12609..13931
DNA (1323bp) protein (441aa)
Polysaccharide biosynthesis protein n=1 Tax=Thioalkalivibrio sp. (strain K90mix) RepID=D3SAK6_THISK
polysaccharide biosynthesis protein
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:ADC72061.1}; TaxID=396595 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sp. (strain K90mix).;"
RTP_02272018_0_2um_scaffold_561_11
Gynuella sunshinyii, Gynuella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13931..14557
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Thioalkalivibrio versutus RepID=UPI000364353E
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylase {ECO:0000313|EMBL:AJQ95470.1}; TaxID=1445510 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillales; Gynuella.;" source="Gynuella sunshinyii YC6258.;"
RTP_02272018_0_2um_scaffold_561_12
Marinobacter sp. EN3, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14739..15935
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Marinobacter sp. EN3 RepID=U7HMH8_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:ERS11288.1}; TaxID=1397533 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. EN3.;"
family 2 glycosyl transferase
RTP_02272018_0_2um_scaffold_561_13
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16000..17196)
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000364A991
DegT/DnrJ/EryC1/StrS family aminotransferase
Aminotransferase {ECO:0000313|EMBL:KGB53675.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
RTP_02272018_0_2um_scaffold_561_14
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17201..18043)
DNA (843bp) protein (281aa)
methyltransferase FkbM family protein n=1 Tax=Synechococcus sp. CB0205 RepID=UPI0002002F72
FkbM family methyltransferase protein
FkbM family methyltransferase protein {ECO:0000313|EMBL:AJD45094.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
RTP_02272018_0_2um_scaffold_561_15
Pseudoalteromonas sp. OCN003, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18113..18775)
DNA (663bp) protein (221aa)
Haloacid dehalogenase-like hydrolase n=1 Tax=Capnocytophaga sp. oral taxon 412 str. F0487 RepID=I9P845_9FLAO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY64590.1}; TaxID=1348114 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas sp. OCN003.;"
RTP_02272018_0_2um_scaffold_561_16
Myroides profundi, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18768..19607)
DNA (840bp) protein (280aa)
ATP-grasp domain protein n=1 Tax=Capnocytophaga sp. oral taxon 380 str. F0488 RepID=L1P032_9FLAO
carbamoyl-phosphate synthase large subunit
Carbamoyl-phosphate synthase large subunit {ECO:0000313|EMBL:AJH15300.1}; TaxID=480520 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides profundi.;"
RTP_02272018_0_2um_scaffold_561_17
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19714..20325)
DNA (612bp) protein (204aa)
sugar transferase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000361A228
Glycosyltransferase {ECO:0000313|EMBL:KGB53676.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
sugar transferase
RTP_02272018_0_2um_scaffold_561_18
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20333..21595)
DNA (1263bp) protein (421aa)
Glycosyl transferase, group 1 n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WA92_ACISJ
group 1 glycosyl transferase
Glycosyl transferase, group 1 {ECO:0000313|EMBL:ABM43167.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
RTP_02272018_0_2um_scaffold_561_19
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21592..22746)
DNA (1155bp) protein (385aa)
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
O-antigen biosynthesis protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TY40_9RHOB
O-antigen biosynthesis protein {ECO:0000313|EMBL:EAQ03074.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
RTP_02272018_0_2um_scaffold_561_20
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22760..23887)
DNA (1128bp) protein (376aa)
Probable NAD dependent epimerase/dehydratase, possibly involved in polysaccharide biosynthesis n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5NZN9_AROAE
NAD dependent epimerase/dehydratase
Probable NAD dependent epimerase/dehydratase, possibly involved in polysaccharide biosynthesis {ECO:0000313|EMBL:CAI09475.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
RTP_02272018_0_2um_scaffold_561_21
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23892..24941)
DNA (1050bp) protein (350aa)
Similar to polysaccharide biosynthesis protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5NZP0_AROAE
wbjB; hypothetical protein
Similar to polysaccharide biosynthesis protein {ECO:0000313|EMBL:CAI09474.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
RTP_02272018_0_2um_scaffold_561_22
Desulfatibacillum alkenivorans, Desulfatibacillum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24992..25759)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=SAR406 cluster bacterium SCGC AB-629-J13 RepID=UPI0003667467
imidazole glycerol phosphate synthase subunit HisF
Histidine biosynthesis protein {ECO:0000313|EMBL:ACL03015.1}; TaxID=439235 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatibacillum.;" source="Desulfatibacillum alkenivorans (strain AK-01).;"
RTP_02272018_0_2um_scaffold_561_23
Pseudomonas fulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25763..26377)
DNA (615bp) protein (205aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=47880 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fulva.;"
hypothetical protein n=1 Tax=SAR406 cluster bacterium SCGC AB-629-J13 RepID=UPI0003745A65
imidazole glycerol phosphate synthase subunit HisH
RTP_02272018_0_2um_scaffold_561_24
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

Not on your lists

comp(26380..27522)
DNA (1143bp) protein (381aa)
hypothetical protein n=1 Tax=SAR406 cluster bacterium SCGC AB-629-J13 RepID=UPI00035F6003
LPS biosynthesis protein
Tax=BJP_08E140C01_Bacteroidetes_41_49
RTP_02272018_0_2um_scaffold_561_25
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27631..29829)
DNA (2199bp) protein (733aa)
non-specific protein-tyrosine kinase (EC:2.7.10.2)
Non-specific protein-tyrosine kinase {ECO:0000313|EMBL:AJA09023.1}; EC=2.7.10.2 {ECO:0000313|EMBL:AJA09023.1};; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
Non-specific protein-tyrosine kinase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFT8_SPHWW
RTP_02272018_0_2um_scaffold_561_26
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30069..31460
DNA (1392bp) protein (464aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI00036BA08A
Putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:AJA09025.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
RTP_02272018_0_2um_scaffold_561_27
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31770..32180)
DNA (411bp) protein (137aa)
Integrase n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EHT0_9RHOB
Integrase family protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
RTP_02272018_0_2um_scaffold_561_28
unknown

Not on your lists

comp(32482..33012)
DNA (531bp) protein (177aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_561_29
unknown

Not on your lists

comp(33037..33213)
DNA (177bp) protein (59aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00036FF21C
Displaying 29 items

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