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RTP_02272018_0_2um_scaffold_723

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_723_1
Burkholderia sp. lig30, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(140..2074)
DNA (1935bp) protein (645aa)
capD; polysaccharide biosynthesis protein (EC:4.2.1.46)
Polysaccharide biosynthesis protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IUF9_HERSS
Polysaccharide biosynthesis protein CapD {ECO:0000313|EMBL:KDB08734.1}; TaxID=1192124 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. lig30.;"
RTP_02272018_0_2um_scaffold_723_2
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2683..3279)
DNA (597bp) protein (199aa)
Sugar transferase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21Z06_RHOFD
sugar transferase
Sugar transferase {ECO:0000313|EMBL:ABD68997.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
RTP_02272018_0_2um_scaffold_723_3
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3272..3823)
DNA (552bp) protein (184aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21V09_RHOFD
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
RTP_02272018_0_2um_scaffold_723_4
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3838..4710)
DNA (873bp) protein (291aa)
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21V10_RHOFD
glucose-1-phosphate thymidylyltransferase
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
RTP_02272018_0_2um_scaffold_723_5
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5017..5985)
DNA (969bp) protein (323aa)
NAD-dependent epimerase/dehydratase n=1 Tax=uncultured bacterium RepID=K2EI85_9BACT
hypothetical protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
RTP_02272018_0_2um_scaffold_723_6
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5982..6905)
DNA (924bp) protein (308aa)
rfbG; dTDP-rhamnosyl transferase rfbG (EC:2.4.-.-)
Lipopolysaccharide biosynthesis protein n=2 Tax=Pseudomonas syringae RepID=F3GWC3_PSESX
Tax=BJP_IG2102_Gammaproteobacteria_62_140
RTP_02272018_0_2um_scaffold_723_7
Sulfolobus islandicus, Sulfolobus, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(6959..8083)
DNA (1125bp) protein (375aa)
Glycosyl transferase group 1 n=1 Tax=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) RepID=C4KER8_SULIK
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ACR41265.1}; TaxID=426118 species="Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus.;" source="Sulfolobus islandicus (strain M.16.4 / Kamchatka #3).;"
RTP_02272018_0_2um_scaffold_723_8
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

Not on your lists

comp(8368..9105)
DNA (738bp) protein (246aa)
Glycosyl transferase family 2 n=1 Tax=Anoxybacillus flavithermus AK1 RepID=M8DVE3_9BACI
wcaE; b-glycosyltransferase
Tax=RBG_13_Caldithrix_44_9_curated
RTP_02272018_0_2um_scaffold_723_9
unknown

Not on your lists

comp(9108..10382)
DNA (1275bp) protein (425aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_723_10
unknown

Not on your lists

11014..11304
DNA (291bp) protein (97aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_723_11
Kosmotoga olearia, Kosmotoga, Kosmotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(11592..12569)
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Kosmotoga olearia (strain TBF 19.5.1) RepID=C5CEA1_KOSOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR79205.1}; Flags: Precursor;; TaxID=521045 species="Bacteria; Thermotogae; Kosmotogales; Kosmotogaceae; Kosmotoga.;" source="Kosmotoga olearia (strain TBF 19.5.1).;"
RTP_02272018_0_2um_scaffold_723_12
unknown

Not on your lists

comp(12603..13529)
DNA (927bp) protein (309aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_723_13
GWF2_RBX1_35_9_curated, RBX1, Bacteria

Not on your lists

comp(13543..14934)
DNA (1392bp) protein (464aa)
Membrane protein involved in the export of O-antigen and teichoic acid n=1 Tax=Synechocystis sp. PCC 7509 RepID=L8KS45_9SYNC
multi antimicrobial extrusion protein MatE
Tax=GWF2_RBX1_35_9_curated
RTP_02272018_0_2um_scaffold_723_14
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15009..15920)
DNA (912bp) protein (304aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=N2B9C3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EOS16244.1}; TaxID=1235789 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii dnLKV18.;"
NAD-dependent epimerase/dehydratase
RTP_02272018_0_2um_scaffold_723_15
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

Not on your lists

comp(15933..16925)
DNA (993bp) protein (331aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6A290_9PORP
probable NDP-hexose-3-ketoreductase
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
RTP_02272018_0_2um_scaffold_723_16
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16941..18371)
DNA (1431bp) protein (477aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6A2R1_9PORP
NDP-hexose 2,3-dehydratase {ECO:0000313|EMBL:KJS06498.1}; TaxID=1629721 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
NDP-hexose 2,3-dehydratase
RTP_02272018_0_2um_scaffold_723_17
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18582..19709)
DNA (1128bp) protein (376aa)
GDP-mannose 4,6-dehydratase; K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47] id=5081442 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
GDP-mannose 4,6-dehydratase
Tax=GWE1_Burkholderiales_65_30_curated
RTP_02272018_0_2um_scaffold_723_18
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19720..20697)
DNA (978bp) protein (326aa)
GDP-L-fucose synthase {ECO:0000256|HAMAP-Rule:MF_00956}; EC=1.1.1.271 {ECO:0000256|HAMAP-Rule:MF_00956};; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase {ECO:0000256|HAMAP-Rule:MF_00956}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
GDP-L-fucose synthase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21Z34_RHOFD
NAD-dependent epimerase/dehydratase
RTP_02272018_0_2um_scaffold_723_19
unknown

Not on your lists

comp(20960..21154)
DNA (195bp) protein (65aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_723_20
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21706..23154
DNA (1449bp) protein (483aa)
Transport transmembrane protein n=2 Tax=Achromobacter xylosoxidans C54 RepID=E5UG31_ALCXX
Multidrug-efflux transporter 3 {ECO:0000313|EMBL:CKI24647.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
Multidrug resistance protein B
RTP_02272018_0_2um_scaffold_723_21

Not on your lists

23170..24528
DNA (1359bp) protein (453aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DYS2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD98933.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
RTP_02272018_0_2um_scaffold_723_22
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24544..25482
DNA (939bp) protein (313aa)
UDP-glucuronate decarboxylase {ECO:0000313|EMBL:CBS91597.1}; EC=4.1.1.35 {ECO:0000313|EMBL:CBS91597.1};; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
UDP-glucuronate decarboxylase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZJ49_AZOL4
UDP-glucuronate decarboxylase
Displaying 22 items

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