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RTP_02272018_0_2um_scaffold_823

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_823_1

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3..713
-----------------
DNA (711bp)
protein (237aa)
Phosphoenolpyruvate-protein phosphotransferase (Phosphotransferase system, enzyme I) (Protein I) {ECO:0000313|EMBL:CBI10890.1}; EC=2.7.3.9 {ECO:0000313|EMBL:CBI10890.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase (Phosphotransferase system, enzyme I) (Protein I) n=1 Tax=mine drainage metagenome RepID=E6QUG7_9ZZZZ
RTP_02272018_0_2um_scaffold_823_2

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comp(716..1423)
-----------------
DNA (708bp)
protein (236aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QTK0_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10572.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_823_3

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comp(1433..1879)
-----------------
DNA (447bp)
protein (149aa)
Glycine cleavage system H protein 2 n=1 Tax=mine drainage metagenome RepID=E6QTJ9_9ZZZZ
Glycine cleavage system H protein 2 {ECO:0000313|EMBL:CBI10571.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
glycine cleavage H-protein
RTP_02272018_0_2um_scaffold_823_4

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comp(1889..2284)
-----------------
DNA (396bp)
protein (132aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QTJ8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10570.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_823_5

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2355..3032
-----------------
DNA (678bp)
protein (226aa)
Putative Bacterial regulatory protein, Crp n=1 Tax=mine drainage metagenome RepID=E6QQL7_9ZZZZ
Putative Bacterial regulatory protein, Crp {ECO:0000313|EMBL:CBI09538.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Crp/Fnr family transcriptional regulator
RTP_02272018_0_2um_scaffold_823_6
Azotobacter chroococcum, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3040..3387
-----------------
DNA (348bp)
protein (116aa)
tellurite resistance protein n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B52DB7
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJE20522.1}; TaxID=1328314 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter chroococcum NCIMB 8003.;"
RTP_02272018_0_2um_scaffold_823_7
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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3428..5059
-----------------
DNA (1632bp)
protein (544aa)
Phosphoglucomutase {ECO:0000313|EMBL:GAO34464.1}; EC=5.4.2.2 {ECO:0000313|EMBL:GAO34464.1};; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CT25_SIDLE
phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I
RTP_02272018_0_2um_scaffold_823_8
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5073..5927)
-----------------
DNA (855bp)
protein (285aa)
RIO-like kinase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B0N1_9PROT
RIO-like kinase
Tax=CG_Beta_01
RTP_02272018_0_2um_scaffold_823_9
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6279..7727
-----------------
DNA (1449bp)
protein (483aa)
hypothetical protein n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B73026
Uncharacterized protein {ECO:0000313|EMBL:EEW26104.1}; Flags: Precursor;; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_823_10
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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8097..9224
-----------------
DNA (1128bp)
protein (376aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
Carbamoyl-phosphate synthase small chain n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJS0_THIDA
carbamoyl-phosphate synthase small subunit
RTP_02272018_0_2um_scaffold_823_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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9320..12526
-----------------
DNA (3207bp)
protein (1069aa)
carbamoyl-phosphate synthase large subunit; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] id=12497233 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
carB; carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_823_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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12537..13022
-----------------
DNA (486bp)
protein (162aa)
Transcription elongation factor GreA id=1326657 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
GreA/GreB family elongation factor
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_823_13
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

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13022..13477
-----------------
DNA (456bp)
protein (152aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B283_9PROT
hypothetical protein
Tax=CG_Beta_01
RTP_02272018_0_2um_scaffold_823_14
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13478..13774)
-----------------
DNA (297bp)
protein (99aa)
RNA-binding protein YhbY n=1 Tax=beta proteobacterium L13 RepID=UPI00036985D9
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_823_15
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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13813..14442
-----------------
DNA (630bp)
protein (210aa)
FtsJ; ribosomal RNA large subunit methyltransferase J (EC:2.1.1.-)
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Azoarcus sp. (strain BH72) RepID=RLME_AZOSB
Tax=GWA2_Gallionellales_60_18_curated
RTP_02272018_0_2um_scaffold_823_16
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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14507..16402
-----------------
DNA (1896bp)
protein (632aa)
ATP-dependent metalloprotease FtsH (EC:3.6.4.6)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9V4_9PROT
RTP_02272018_0_2um_scaffold_823_17
GWA2_Gallionellales_59_43_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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16466..17293
-----------------
DNA (828bp)
protein (276aa)
dihydropteroate synthase (EC:2.5.1.15)
Dihydropteroate synthase id=1326652 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWA2_Gallionellales_59_43_curated
RTP_02272018_0_2um_scaffold_823_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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17290..18645
-----------------
DNA (1356bp)
protein (452aa)
phosphoglucosamine mutase (EC:5.4.2.10)
phosphoglucosamine mutase n=1 Tax=Thiobacillus thioparus RepID=UPI000365C22E
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_823_19
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18694..19458)
-----------------
DNA (765bp)
protein (255aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
Phosphate ABC transporter, ATPase subunit n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DK00_METS0
phosphate ABC transporter ATPase
RTP_02272018_0_2um_scaffold_823_20
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(19494..20339)
-----------------
DNA (846bp)
protein (282aa)
Phosphate ABC transporter permease n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AJQ6_9PROT
Phosphate transporter permease subunit PtsA {ECO:0000313|EMBL:GAO36162.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
pstA; phosphate ABC transporter permease
RTP_02272018_0_2um_scaffold_823_21
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

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comp(20342..21304)
-----------------
DNA (963bp)
protein (321aa)
Phosphate ABC transporter permease n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9V5_9PROT
pstC; phosphate ABC transporter permease
Tax=CG_Beta_01
RTP_02272018_0_2um_scaffold_823_22
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21445..22491)
-----------------
DNA (1047bp)
protein (349aa)
Phosphate-binding protein PstS n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABK1_9PROT
Phosphate-binding protein PstS {ECO:0000256|PIRNR:PIRNR002756}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
phosphate ABC transporter substrate-binding protein
RTP_02272018_0_2um_scaffold_823_23
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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22711..22983
-----------------
DNA (273bp)
protein (91aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
tpiA; triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=TPIS_THIDA
Displaying 23 items

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