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RTP_02272018_0_2um_scaffold_866

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_866_1
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..137
DNA (135bp) protein (45aa)
elongation factor Tu n=1 Tax=Methylotenera RepID=UPI00035C2D41
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
elongation factor Tu
RTP_02272018_0_2um_scaffold_866_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


216..524
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=1 Tax=Uliginosibacterium gangwonense RepID=UPI0003780FB8
30S ribosomal protein S10
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
RTP_02272018_0_2um_scaffold_866_3
Chromobacterium piscinae, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


604..1248
DNA (645bp) protein (215aa)
50S ribosomal protein L3 n=1 Tax=Chitiniphilus shinanonensis RepID=UPI000364F3D0
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=686831 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium piscinae.;"
rplC; 50S ribosomal protein L3
RTP_02272018_0_2um_scaffold_866_4
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1248..1871
DNA (624bp) protein (208aa)
50S ribosomal protein L4 n=1 Tax=Herminiimonas arsenicoxydans RepID=RL4_HERAR
rplD; 50S ribosomal protein L4
Tax=GWA2_Rhodocyclales_65_20_curated
RTP_02272018_0_2um_scaffold_866_5
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1868..2179
DNA (312bp) protein (104aa)
50S ribosomal protein L23 n=1 Tax=Thauera terpenica 58Eu RepID=T0ASQ9_9RHOO
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
rplW; 50S ribosomal protein L23
RTP_02272018_0_2um_scaffold_866_6
GWA2_Gallionellales_59_43_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2189..3016
DNA (828bp) protein (276aa)
50S ribosomal protein L2 id=1820687 bin=GWE2_Gallionellales_58_10 species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
ribosomal protein L2
Tax=GWA2_Gallionellales_59_43_curated
RTP_02272018_0_2um_scaffold_866_7
GWA2_Gallionellales_59_43_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3030..3305
DNA (276bp) protein (92aa)
rpsS; 30S ribosomal protein S19
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 id=12495319 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Tax=GWA2_Gallionellales_59_43_curated
RTP_02272018_0_2um_scaffold_866_8
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3315..3647
DNA (333bp) protein (111aa)
50S ribosomal protein L22 n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B197_9PROT
rplV; 50S ribosomal protein L22
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
RTP_02272018_0_2um_scaffold_866_9
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3657..4367
DNA (711bp) protein (237aa)
30S ribosomal protein S3 n=1 Tax=Leeia oryzae RepID=UPI00037C8B93
rpsC; 30S ribosomal protein S3
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_02272018_0_2um_scaffold_866_10
GWF2_Sideroxydans_59_14_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4351..4767
DNA (417bp) protein (139aa)
50S ribosomal protein L16 n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AIV7_9PROT
rplP; 50S ribosomal protein L16
Tax=GWF2_Sideroxydans_59_14_curated
RTP_02272018_0_2um_scaffold_866_11
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4769..4972
DNA (204bp) protein (68aa)
50S ribosomal protein L29 n=1 Tax=Azoarcus sp. KH32C RepID=H0PUK1_9RHOO
rpmC; 50S ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
RTP_02272018_0_2um_scaffold_866_12
Candidatus Methylopumilus turicensis, Candidatus Methylopumilus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4969..5238
DNA (270bp) protein (90aa)
30S ribosomal protein S17 n=2 Tax=Methylovorus RepID=C6X8T9_METSD
rpsQ; 30S ribosomal protein S17
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=1581680 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium MMS-10A-171.;"
RTP_02272018_0_2um_scaffold_866_13
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5373..5741
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Leeia oryzae RepID=UPI00035F28EF
rplN; 50S ribosomal protein L14
50S ribosomal protein L14 {ECO:0000255|HAMAP-Rule:MF_01367}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
RTP_02272018_0_2um_scaffold_866_14
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5751..6068
DNA (318bp) protein (106aa)
50S ribosomal protein L24 n=1 Tax=Methylotenera mobilis RepID=UPI0003701EF3
rplX; 50S ribosomal protein L24P
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
RTP_02272018_0_2um_scaffold_866_15
Kingella denitrificans, Kingella, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6078..6617
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Aquaspirillum serpens RepID=UPI0003B50347
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; TaxID=888741 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Kingella.;" source="Kingella denitrificans ATCC 33394.;"
rplE; 50S ribosomal protein L5
RTP_02272018_0_2um_scaffold_866_16
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6625..6930
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CP78_SIDLE
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
ribosomal protein S14
RTP_02272018_0_2um_scaffold_866_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6946..7341
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Thiobacillus thioparus RepID=UPI00037C5C8A
rpsH; 30S ribosomal protein S8
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_866_18
GWA2_Gallionellales_55_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7354..7887
DNA (534bp) protein (178aa)
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 id=12498458 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
rplF; 50S ribosomal protein L6
Tax=GWA2_Gallionellales_55_18_curated
RTP_02272018_0_2um_scaffold_866_19
Chromobacterium piscinae, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7897..8250
DNA (354bp) protein (118aa)
50S ribosomal protein L18 n=1 Tax=Laribacter hongkongensis (strain HLHK9) RepID=RL18_LARHH
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=686831 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium piscinae.;"
rplR; 50S ribosomal protein L18
RTP_02272018_0_2um_scaffold_866_20

Not on your lists


8264..8773
DNA (510bp) protein (170aa)
30S ribosomal subunit protein S5 n=1 Tax=mine drainage metagenome RepID=E6QX33_9ZZZZ
30S ribosomal subunit protein S5 {ECO:0000313|EMBL:CBI11807.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rpsE; 30S ribosomal protein S5
RTP_02272018_0_2um_scaffold_866_21
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8777..8965
DNA (189bp) protein (63aa)
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 id=12498461 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
ribosomal protein L30
RTP_02272018_0_2um_scaffold_866_22
GWA2_Gallionellales_55_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8967..9401
DNA (435bp) protein (145aa)
50S ribosomal protein L15 id=1820623 bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
50S ribosomal protein L15
Tax=GWA2_Gallionellales_55_18_curated
RTP_02272018_0_2um_scaffold_866_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9405..10730
DNA (1326bp) protein (442aa)
Protein translocase subunit SecY n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLM9_THIDA
secY; preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_866_24
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10749..10967
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABA2_9PROT
infA; translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_02272018_0_2um_scaffold_866_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11006..11119
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=1 Tax=Azoarcus sp. (strain BH72) RepID=RL36_AZOSB
rpmJ; 50S ribosomal protein L36
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_866_26

Not on your lists


11177..11539
DNA (363bp) protein (121aa)
30S ribosomal subunit protein S13 n=1 Tax=mine drainage metagenome RepID=E6QX39_9ZZZZ
30S ribosomal subunit protein S13 {ECO:0000313|EMBL:CBI11813.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rpsM; 30S ribosomal protein S13
RTP_02272018_0_2um_scaffold_866_27

Not on your lists


11552..11941
DNA (390bp) protein (130aa)
30S ribosomal subunit protein S11 n=1 Tax=mine drainage metagenome RepID=E6QX41_9ZZZZ
30S ribosomal subunit protein S11 {ECO:0000313|EMBL:CBI11815.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
30S ribosomal protein S11
RTP_02272018_0_2um_scaffold_866_28

Not on your lists


11956..12585
DNA (630bp) protein (210aa)
30S ribosomal subunit protein S4 n=1 Tax=mine drainage metagenome RepID=E6QX42_9ZZZZ
30S ribosomal subunit protein S4 {ECO:0000313|EMBL:CBI11816.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
30S ribosomal protein S4
RTP_02272018_0_2um_scaffold_866_29

Not on your lists

12615..13598
DNA (984bp) protein (328aa)
RNA polymerase, alpha subunit {ECO:0000313|EMBL:CBI11817.1}; EC=2.7.7.6 {ECO:0000313|EMBL:CBI11817.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RNA polymerase, alpha subunit n=1 Tax=mine drainage metagenome RepID=E6QX43_9ZZZZ
rpoA; DNA-directed RNA polymerase subunit alpha
RTP_02272018_0_2um_scaffold_866_30

Not on your lists


13620..14012
DNA (393bp) protein (131aa)
50S ribosomal subunit protein L17 n=1 Tax=mine drainage metagenome RepID=E6QX44_9ZZZZ
50S ribosomal subunit protein L17 {ECO:0000313|EMBL:CBI11818.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rplQ; 50S ribosomal protein L17
Displaying items 1-30 of 33 in total

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