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RTP_02272018_0_2um_scaffold_1026

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_1026_1

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comp(2..355)
DNA (354bp) protein (118aa)
CDP-diacylglycerol--serine O-phosphatidyltransferase {ECO:0000313|EMBL:CBI09647.1}; EC=2.7.8.8 {ECO:0000313|EMBL:CBI09647.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
pssA; pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase (EC:2.7.8.8)
CDP-diacylglycerol--serine O-phosphatidyltransferase n=1 Tax=mine drainage metagenome RepID=E6QQX6_9ZZZZ
RTP_02272018_0_2um_scaffold_1026_2

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comp(594..1610)
DNA (1017bp) protein (339aa)
Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) {ECO:0000313|EMBL:CBI09649.1}; EC=1.1.1.86 {ECO:0000313|EMBL:CBI09649.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) n=1 Tax=mine drainage metagenome RepID=E6QQX8_9ZZZZ
RTP_02272018_0_2um_scaffold_1026_3

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comp(1666..2157)
DNA (492bp) protein (164aa)
Acetolactate synthase isozyme III small subunit (AHAS-III) (Acetohydroxy-acid synthase III small subunit) (ALS-III) {ECO:0000313|EMBL:CBI09650.1}; EC=2.2.1.6 {ECO:0000313|EMBL:CBI09650.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ilvH; acetolactate synthase 3 regulatory subunit (EC:2.2.1.6)
Acetolactate synthase isozyme III small subunit (AHAS-III) (Acetohydroxy-acid synthase III small subunit) (ALS-III) n=1 Tax=mine drainage metagenome RepID=E6QQX9_9ZZZZ
RTP_02272018_0_2um_scaffold_1026_4

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comp(2159..3865)
DNA (1707bp) protein (569aa)
Acetolactate synthase large subunit (AHAS) (Acetohydroxy-acid synthase large subunit) (ALS) {ECO:0000313|EMBL:CBI09651.1}; EC=2.2.1.6 {ECO:0000313|EMBL:CBI09651.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
acetolactate synthase, large subunit (EC:2.2.1.6)
Acetolactate synthase large subunit (AHAS) (Acetohydroxy-acid synthase large subunit) (ALS) n=1 Tax=mine drainage metagenome RepID=E6QQY0_9ZZZZ
RTP_02272018_0_2um_scaffold_1026_5
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3936..4748)
DNA (813bp) protein (271aa)
peptidase M48 n=1 Tax=Herbaspirillum lusitanum RepID=UPI00031F21F3
hypothetical protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
RTP_02272018_0_2um_scaffold_1026_6

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comp(4862..5710)
DNA (849bp) protein (283aa)
DNA polymerase I (POL I) {ECO:0000313|EMBL:CBI09652.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CBI09652.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
DNA polymerase I (EC:2.7.7.7)
DNA polymerase I (POL I) n=1 Tax=mine drainage metagenome RepID=E6QQY1_9ZZZZ
RTP_02272018_0_2um_scaffold_1026_7

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comp(5704..7374)
DNA (1671bp) protein (557aa)
DNA polymerase I (POL I) {ECO:0000313|EMBL:CBI09652.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CBI09652.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
DNA polymerase I (EC:2.7.7.7)
DNA polymerase I (POL I) n=1 Tax=mine drainage metagenome RepID=E6QQY1_9ZZZZ
RTP_02272018_0_2um_scaffold_1026_8

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7385..8113
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QQY2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09653.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_1026_9
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

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8177..8506
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBJ7_NITMU
hypothetical protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
RTP_02272018_0_2um_scaffold_1026_10

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8556..9521
DNA (966bp) protein (322aa)
Homoserine kinase (HSK) (HK) {ECO:0000313|EMBL:CBI09655.1}; EC=2.7.1.39 {ECO:0000313|EMBL:CBI09655.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
homoserine kinase (EC:2.7.1.39)
Homoserine kinase (HSK) (HK) n=1 Tax=mine drainage metagenome RepID=E6QQY4_9ZZZZ
RTP_02272018_0_2um_scaffold_1026_11

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9518..10252
DNA (735bp) protein (245aa)
Putative transmembrane protein n=1 Tax=mine drainage metagenome RepID=E6QQY5_9ZZZZ
Putative transmembrane protein {ECO:0000313|EMBL:CBI09656.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_1026_12
unknown

Not on your lists

comp(10297..10623)
DNA (327bp) protein (109aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_1026_13
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10720..12816
DNA (2097bp) protein (699aa)
CheA signal transduction histidine kinase n=1 Tax=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) RepID=C6WXT9_METML
CheA signal transduction histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_02272018_0_2um_scaffold_1026_14
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12828..13199
DNA (372bp) protein (124aa)
Response regulator receiver protein n=1 Tax=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) RepID=C6WXU0_METML
Response regulator receiver {ECO:0000313|EMBL:EYR66347.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
response regulator receiver protein
RTP_02272018_0_2um_scaffold_1026_15
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13201..13668
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) RepID=C6WXU1_METML
Uncharacterized protein {ECO:0000313|EMBL:EYR66348.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_1026_16
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13682..14881)
DNA (1200bp) protein (400aa)
Major facilitator superfamily transporter n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D6W4_BRAJP
MFS transporter
Tax=GWC2_Geobacteraceae_53_11_curated
RTP_02272018_0_2um_scaffold_1026_17
unknown

Not on your lists

14944..15231
DNA (288bp) protein (96aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_1026_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15280..15654)
DNA (375bp) protein (125aa)
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 id=12493275 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rplS; 50S ribosomal protein L19
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_1026_19
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15750..16508)
DNA (759bp) protein (253aa)
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Methylovorus sp. (strain SIP3-4) RepID=C6XA88_METSD
RTP_02272018_0_2um_scaffold_1026_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16508..16987)
DNA (480bp) protein (160aa)
Ribosome maturation factor RimM n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RIMM_THIDA
16S rRNA-processing protein RimM
Ribosome maturation factor RimM {ECO:0000255|HAMAP-Rule:MF_00014}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_1026_21
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16998..17252)
DNA (255bp) protein (85aa)
30S ribosomal protein S16 n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UBN8_ADVKW
SSU ribosomal protein S16p
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
RTP_02272018_0_2um_scaffold_1026_22
R_Methylotenera_45_14, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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17422..18222
DNA (801bp) protein (267aa)
Methionine aminopeptidase (MAP) (Peptidase M) n=1 Tax=mine drainage metagenome RepID=E6QRA2_9ZZZZ
methionine aminopeptidase
Tax=RIFCSPLOWO2_02_FULL_Methylotenera_45_14_curated
RTP_02272018_0_2um_scaffold_1026_23

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18223..20784
DNA (2562bp) protein (854aa)
(Protein-PII) uridylyltransferase (PII uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) {ECO:0000313|EMBL:CBI09775.1}; EC=2.7.7.59 {ECO:0000313|EMBL:CBI09775.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
(Protein-PII) uridylyltransferase (PII uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) n=1 Tax=mine drainage metagenome RepID=E6QRA3_9ZZZZ
PII uridylyl-transferase
RTP_02272018_0_2um_scaffold_1026_24

Not on your lists

comp(20781..21683)
DNA (903bp) protein (301aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:CBI09783.1}; EC=2.7.7.9 {ECO:0000313|EMBL:CBI09783.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
UTP--glucose-1-phosphate uridylyltransferase (EC:2.7.7.9)
UTP--glucose-1-phosphate uridylyltransferase n=1 Tax=mine drainage metagenome RepID=E6QRB1_9ZZZZ
RTP_02272018_0_2um_scaffold_1026_25
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21695..24784)
DNA (3090bp) protein (1030aa)
ligA; DNA ligase (EC:6.5.1.2)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
DNA ligase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B4E4_9PROT
RTP_02272018_0_2um_scaffold_1026_26

Not on your lists

comp(24781..25122)
DNA (342bp) protein (114aa)
Cell division protein ftsB n=1 Tax=mine drainage metagenome RepID=E6QRB4_9ZZZZ
Cell division protein ftsB {ECO:0000313|EMBL:CBI09786.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
septum formation initiator
Displaying 26 items

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