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RTP_02272018_0_2um_scaffold_1048

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_1048_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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2..490
DNA (489bp) protein (163aa)
Molybdenum ABC transporter, periplasmic molybdate-binding protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QU83_METTR
molybdenum ABC transporter periplasmic molybdate-binding protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
RTP_02272018_0_2um_scaffold_1048_2
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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487..1185
DNA (699bp) protein (233aa)
Molybdate ABC transporter, inner membrane subunit n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZVQ8_OPITP
molybdate ABC transporter inner membrane subunit
Molybdate ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ACB74994.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
RTP_02272018_0_2um_scaffold_1048_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1252..1713)
DNA (462bp) protein (154aa)
Outer membrane lipoprotein, putative id=1333496 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
outer membrane lipoprotein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_1048_4
GWA2_Gallionellales_55_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1757..2698)
DNA (942bp) protein (314aa)
sugar kinase n=1 Tax=Gallionella sp. SCGC AAA018-N21 RepID=UPI00037D66E2
PfkB
Tax=GWA2_Gallionellales_55_18_curated
RTP_02272018_0_2um_scaffold_1048_5

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2816..3658
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QTG5_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10537.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_1048_6
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3714..3947)
DNA (234bp) protein (78aa)
Thiol-disulfide isomerase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AE35_9PROT
Glutaredoxin {ECO:0000313|EMBL:KHD03652.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
thiol-disulfide isomerase
RTP_02272018_0_2um_scaffold_1048_7
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4127..4441)
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036E10CA
Uncharacterized protein {ECO:0000313|EMBL:GAO35391.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_1048_8
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4471..5532)
DNA (1062bp) protein (354aa)
Permease n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AE37_9PROT
permease
Permease {ECO:0000313|EMBL:BAN36903.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_02272018_0_2um_scaffold_1048_9
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5721..6137
DNA (417bp) protein (139aa)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
Arsenate reductase n=1 Tax=Burkholderia multivorans (strain ATCC 17616 / 249) RepID=A9AS15_BURM1
arsenate reductase
RTP_02272018_0_2um_scaffold_1048_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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6395..7432
DNA (1038bp) protein (346aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000363B4E0
nucleoside-diphosphate-sugar epimerase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_1048_11
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7436..8650
DNA (1215bp) protein (405aa)
cca; tRNA nucleotidyltransferase (EC:2.7.7.72)
hypothetical protein n=1 Tax=Herbaspirillum lusitanum RepID=UPI0002F3B02B
Multifunctional CCA protein {ECO:0000256|HAMAP-Rule:MF_01261, ECO:0000256|SAAS:SAAS00054545}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
RTP_02272018_0_2um_scaffold_1048_12

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8647..9183
DNA (537bp) protein (179aa)
Putative Histidinol-phosphate phosphatase {ECO:0000313|EMBL:CBI11935.1}; EC=3.1.3.15 {ECO:0000313|EMBL:CBI11935.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Putative Histidinol-phosphate phosphatase n=1 Tax=mine drainage metagenome RepID=E6QXG1_9ZZZZ
histidinol-phosphate phosphatase family protein
RTP_02272018_0_2um_scaffold_1048_13

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9180..9881
DNA (702bp) protein (234aa)
Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:CBI11933.1}; EC=2.3.1.51 {ECO:0000313|EMBL:CBI11933.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=mine drainage metagenome RepID=E6QXF9_9ZZZZ
phospholipid/glycerol acyltransferase
RTP_02272018_0_2um_scaffold_1048_14

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9886..10605
DNA (720bp) protein (240aa)
Putative metal-dependent hydrolase n=1 Tax=mine drainage metagenome RepID=E6QXF8_9ZZZZ
Putative metal-dependent hydrolase {ECO:0000313|EMBL:CBI11932.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_1048_15

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10668..12368
DNA (1701bp) protein (567aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QXF7_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI11931.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_1048_16

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12368..12955
DNA (588bp) protein (196aa)
Putative Outer-membrane lipoprotein lolB n=1 Tax=mine drainage metagenome RepID=E6QXF6_9ZZZZ
Putative Outer-membrane lipoprotein lolB {ECO:0000313|EMBL:CBI11930.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
outer membrane lipoprotein LolB
RTP_02272018_0_2um_scaffold_1048_17
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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12943..13794
DNA (852bp) protein (284aa)
4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CLY7_SIDLE
RTP_02272018_0_2um_scaffold_1048_trna_1
unknown

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13820..13891
DNA (72bp)
transferRNA Gln
RTP_02272018_0_2um_scaffold_1048_18

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13991..14941
DNA (951bp) protein (317aa)
Ribose-phosphate pyrophosphokinase (RPPK) (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) {ECO:0000313|EMBL:CBI11927.1}; EC=2.7.6.1 {ECO:0000313|EMBL:CBI11927.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase (RPPK) (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) n=1 Tax=mine drainage metagenome RepID=E6QXF3_9ZZZZ
RTP_02272018_0_2um_scaffold_1048_19

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15050..15640
DNA (591bp) protein (197aa)
Putative 50S ribosomal protein L25 (General stress protein CTC) rplY n=1 Tax=mine drainage metagenome RepID=E6QXF2_9ZZZZ
Putative 50S ribosomal protein L25 (General stress protein CTC) rplY {ECO:0000313|EMBL:CBI11926.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
50S ribosomal protein L25
RTP_02272018_0_2um_scaffold_1048_20

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15652..16227
DNA (576bp) protein (192aa)
Peptidyl-tRNA hydrolase (PTH) {ECO:0000313|EMBL:CBI11925.1}; EC=3.1.1.29 {ECO:0000313|EMBL:CBI11925.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase (PTH) n=1 Tax=mine drainage metagenome RepID=E6QXF1_9ZZZZ
RTP_02272018_0_2um_scaffold_1048_21

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16233..17324
DNA (1092bp) protein (364aa)
GTP-dependent nucleic acid-binding protein EngD n=1 Tax=mine drainage metagenome RepID=E6QXF0_9ZZZZ
GTP-dependent nucleic acid-binding protein EngD {ECO:0000313|EMBL:CBI11924.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
GTP-binding protein YchF
RTP_02272018_0_2um_scaffold_1048_trna_2
unknown

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17364..17445
DNA (82bp)
transferRNA Tyr
RTP_02272018_0_2um_scaffold_1048_trna_3
unknown

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17508..17578
DNA (71bp)
transferRNA Gly
RTP_02272018_0_2um_scaffold_1048_trna_4
unknown

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17639..17710
DNA (72bp)
transferRNA Thr
RTP_02272018_0_2um_scaffold_1048_22
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17754..17888
DNA (135bp) protein (45aa)
Elongation factor Tu 2 n=1 Tax=Acidovorax sp. (strain JS42) RepID=EFTU2_ACISJ
tufB; GTPase translation elongation factor TU
Putative translation elongation factor Tu {ECO:0000313|EMBL:EFV94344.1}; Flags: Fragment;; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
Displaying 26 items

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