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RTP_02272018_0_2um_scaffold_1194

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_1194_1
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2..313
DNA (312bp) protein (104aa)
Transmembrane protein n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DMD6_METS0
transmembrane protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_1194_2
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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310..861
DNA (552bp) protein (184aa)
Putative transmembrane protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AJR3_9PROT
putative transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:BAN36611.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_02272018_0_2um_scaffold_1194_3
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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861..1373
DNA (513bp) protein (171aa)
Probable prolin-rich transmembrane protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJB5_THIDA
Uncharacterized protein {ECO:0000313|EMBL:GAO36450.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
prolin-rich transmembrane protein
RTP_02272018_0_2um_scaffold_1194_4
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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1370..3355
DNA (1986bp) protein (662aa)
Type II secretory pathway, component HofQ n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ADN8_9PROT
type II secretory pathway, component HofQ
Type II secretory pathway, component HofQ {ECO:0000313|EMBL:BAN36613.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_02272018_0_2um_scaffold_1194_5
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3356..3835
DNA (480bp) protein (160aa)
Putative uncharacterized protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CSW7_SIDLE
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_1194_6
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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3835..4227
DNA (393bp) protein (131aa)
N-terminal methylation site n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5V1_NITMU
N-terminal methylation site
N-terminal methylation site {ECO:0000313|EMBL:ABB75870.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
RTP_02272018_0_2um_scaffold_1194_7
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4184..4702
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002D77FFA
gspG; type II secretion system pseudopilin PulG
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_1194_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4912..5256
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSZ5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90336.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_1194_9
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

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5417..5857
DNA (441bp) protein (147aa)
id=4961698 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RTP_02272018_0_2um_scaffold_1194_10
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6017..6625)
DNA (609bp) protein (203aa)
Lytic transglycosylase catalytic n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABA5_9PROT
lytic transglycosylase catalytic
Lytic transglycosylase catalytic {ECO:0000313|EMBL:BAN36620.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_02272018_0_2um_scaffold_1194_11
Anaerolinea thermophila, Anaerolinea, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

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comp(6743..8254)
DNA (1512bp) protein (504aa)
hypothetical protein n=1 Tax=Methylovulum miyakonense RepID=UPI0003733615
putative thermolysin family peptidase
Putative thermolysin family peptidase {ECO:0000313|EMBL:BAJ64823.1}; TaxID=926569 species="Bacteria; Chloroflexi; Anaerolineae; Anaerolineales; Anaerolineaceae; Anaerolinea.;" source="Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 /; UNI-1).;"
RTP_02272018_0_2um_scaffold_1194_12

Not on your lists

comp(8544..12014)
DNA (3471bp) protein (1157aa)
DNA polymerase III, alpha subunit {ECO:0000313|EMBL:CBI10458.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CBI10458.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
DNA-directed DNA polymerase III, alpha subunit (EC:2.7.7.7)
DNA polymerase III, alpha subunit n=1 Tax=mine drainage metagenome RepID=E6QT86_9ZZZZ
RTP_02272018_0_2um_scaffold_1194_13
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12072..12938
DNA (867bp) protein (289aa)
UPF0176 protein Hsero_3572 n=2 Tax=Herbaspirillum seropedicae RepID=D8IQD9_HERSS
Rhodanese domain protein UPF0176
UPF0176 protein LT85_1182 {ECO:0000256|HAMAP-Rule:MF_00469}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
RTP_02272018_0_2um_scaffold_1194_14
RIFOXYD2_FULL_Sideroxydans_59_7_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12893..13426)
DNA (534bp) protein (178aa)
peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZGS2_9PROT
Tax=RIFOXYD2_FULL_Sideroxydans_59_7_curated
RTP_02272018_0_2um_scaffold_1194_15

Not on your lists

comp(13504..15396)
DNA (1893bp) protein (631aa)
K+ potassium transporter n=1 Tax=mine drainage metagenome RepID=E6QT88_9ZZZZ
K+ potassium transporter {ECO:0000313|EMBL:CBI10460.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
K+ transporter
RTP_02272018_0_2um_scaffold_1194_16

Not on your lists

comp(15420..15983)
DNA (564bp) protein (188aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (Phosphatidylglycerophosphate synthase) (PGP synthase) {ECO:0000313|EMBL:CBI10461.1}; EC=2.7.8.5 {ECO:0000313|EMBL:CBI10461.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (Phosphatidylglycerophosphate synthase) (PGP synthase) n=1 Tax=mine drainage metagenome RepID=E6QT89_9ZZZZ
RTP_02272018_0_2um_scaffold_1194_17
Thiolapillus brandeum, Thiolapillus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16248..16760
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BTR6_9GAMM
conserved hypothetical protein
Thiolapillus brandeum DNA, complete genome {ECO:0000313|EMBL:BAO44021.1}; TaxID=1076588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiolapillus.;" source="Thiolapillus brandeum.;"
RTP_02272018_0_2um_scaffold_1194_18
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16942..17484)
DNA (543bp) protein (181aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BYY9_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL22435.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_1194_19

Not on your lists

comp(17582..19381)
DNA (1800bp) protein (600aa)
UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) n=1 Tax=mine drainage metagenome RepID=E6QT91_9ZZZZ
UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) {ECO:0000313|EMBL:CBI10463.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
UvrABC system protein C
RTP_02272018_0_2um_scaffold_1194_20
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19365..19574)
DNA (210bp) protein (70aa)
Uracil-DNA glycosylase superfamily n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DIQ9_9GAMM
SPO1 DNA polymerase
Tax=GWA2_Rhodocyclales_65_20_curated
Displaying 20 items

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