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RTP_02272018_0_2um_scaffold_1579

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_1579_1
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..546)
DNA (546bp) protein (182aa)
Putative uncharacterized protein n=1 Tax=Marichromatium purpuratum 984 RepID=F9TZG7_MARPU
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
RTP_02272018_0_2um_scaffold_1579_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(547..1092)
DNA (546bp) protein (182aa)
Probable transmembrane protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKW2_THIDA
transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_1579_3
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1089..2036)
DNA (948bp) protein (316aa)
Putative ApbE-like lipoprotein n=1 Tax=Ralstonia solanacearum K60-1 RepID=H5WB37_RALSL
apbE; thiamine biosynthesis lipoprotein apbE transmembrane
Putative ApbE-like lipoprotein {ECO:0000313|EMBL:CCF97008.1}; TaxID=1091042 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum K60-1.;"
RTP_02272018_0_2um_scaffold_1579_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2033..2578)
DNA (546bp) protein (182aa)
Putative signal peptide protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKW0_THIDA
signal peptide protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_1579_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2588..3391)
DNA (804bp) protein (268aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKV9_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96663.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_1579_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3463..3927)
DNA (465bp) protein (155aa)
Bacterioferritin n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GKN7_NITSI
Bacterioferritin {ECO:0000256|RuleBase:RU000623, ECO:0000313|EMBL:KIO49285.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
bacterioferritin
RTP_02272018_0_2um_scaffold_1579_7
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3937..4155)
DNA (219bp) protein (73aa)
BFD domain protein (2Fe-2S)-binding domain protein n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GKA5_NITSI
(2Fe-2S)-binding protein {ECO:0000313|EMBL:AKH37118.1}; TaxID=44574 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
BFD domain-containing protein (2Fe-2S)-binding domain-containing protein
RTP_02272018_0_2um_scaffold_1579_8
Methylomonas methanica, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4171..4353)
DNA (183bp) protein (61aa)
Hemin uptake protein hemP n=1 Tax=Methylomonas methanica (strain MC09) RepID=G0A7A7_METMM
hemin uptake protein HemP
Hemin uptake protein hemP {ECO:0000313|EMBL:AEF99400.1}; TaxID=857087 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas methanica (strain MC09).;"
RTP_02272018_0_2um_scaffold_1579_trna_2
unknown

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comp(4584..4657)
DNA (74bp)
transferRNA Asp
RTP_02272018_0_2um_scaffold_1579_trna_1
unknown

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comp(4718..4790)
DNA (73bp)
transferRNA Glu
RTP_02272018_0_2um_scaffold_1579_9

Not on your lists

comp(4807..5004)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QRX2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09994.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RTP_02272018_0_2um_scaffold_1579_10
unknown

Not on your lists

comp(5096..5494)
DNA (399bp) protein (133aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_1579_11
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5491..5883)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0E0W4_THIND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA34867.1}; TaxID=1255043 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
RTP_02272018_0_2um_scaffold_1579_12
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5889..6803)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00035C8033
biotin/lipoate A/B protein ligase
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
RTP_02272018_0_2um_scaffold_1579_13
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6878..7291)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GUC9_THISH
hypothetical protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
RTP_02272018_0_2um_scaffold_1579_14
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7307..8113)
DNA (807bp) protein (269aa)
CcsA-related protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHP5_9PROT
CcsA-related protein {ECO:0000313|EMBL:CCU62022.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
cytochrome c assembly protein
RTP_02272018_0_2um_scaffold_1579_15
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8194..9537
DNA (1344bp) protein (448aa)
signal recognition particle protein Srp54 n=1 Tax=Thiobacillus thioparus RepID=UPI00036FA614
signal recognition particle protein
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
RTP_02272018_0_2um_scaffold_1579_16
unknown

Not on your lists

9537..9836
DNA (300bp) protein (100aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_1579_17
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9821..10657)
DNA (837bp) protein (279aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00817, ECO:0000256|SAAS:SAAS00037296}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00817, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00817}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00817}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00817}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
7-cyano-7-deazaguanine reductase n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002DE6B94
queF; 7-cyano-7-deazaguanine reductase
RTP_02272018_0_2um_scaffold_1579_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10654..11601)
DNA (948bp) protein (316aa)
Glycine cleavage T-protein (Aminomethyl transferase) id=1338455 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
glycine cleavage system protein T
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_1579_19
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11727..11984)
DNA (258bp) protein (86aa)
Uncharacterized protein n=2 Tax=Ralstonia solanacearum RepID=M4UDH9_RALSL
Uncharacterized protein {ECO:0000313|EMBL:KIF80841.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_1579_20
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12239..13489
DNA (1251bp) protein (417aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
glyA; glycine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABG1_9PROT
RTP_02272018_0_2um_scaffold_1579_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13486..13944
DNA (459bp) protein (153aa)
NrdR family transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI0003614265
ATP-cone domain-containing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_1579_22
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13947..15038
DNA (1092bp) protein (364aa)
5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC:1.1.1.193 3.5.4.26); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] id=12496643 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26)
Tax=RBG_16_Betaproteobacteria_58_11_curated
Displaying 24 items

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