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RTP_02272018_0_2um_scaffold_1603

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_1603_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..173)
DNA (171bp) protein (57aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI000361FDCA
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_1603_2
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(166..852)
DNA (687bp) protein (229aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=ISPD_DECAR
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
RTP_02272018_0_2um_scaffold_1603_3
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

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comp(849..1337)
DNA (489bp) protein (163aa)
Molybdopterin-guanine dinucleotide biosynthesis protein B n=1 Tax=Thauera sp. 28 RepID=N6ZCD2_9RHOO
molybdopterin-guanine dinucleotide biosynthesis protein B
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
RTP_02272018_0_2um_scaffold_1603_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1475..2458
DNA (984bp) protein (328aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_01225}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
molybdenum cofactor biosynthesis protein MoaA n=1 Tax=Thiobacillus denitrificans RepID=UPI000375A73F
GTP cyclohydrolase subunit MoaA
RTP_02272018_0_2um_scaffold_1603_trna_1
unknown

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2567..2639
DNA (73bp)
transferRNA Val
RTP_02272018_0_2um_scaffold_1603_5
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2652..3017)
DNA (366bp) protein (122aa)
Pyrophosphatase n=11 Tax=Pseudomonas aeruginosa RepID=R9ZJ08_PSEAI
pyrophosphatase
Putative pyrophosphohydrolase {ECO:0000313|EMBL:AHW69601.1}; TaxID=1457392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PA96.;"
RTP_02272018_0_2um_scaffold_1603_6
Planctopirus limnophila, Planctopirus, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(3017..3340)
DNA (324bp) protein (108aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SVJ2_PLAL2
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ADG67262.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
RTP_02272018_0_2um_scaffold_1603_7

Not on your lists

comp(3333..4262)
DNA (930bp) protein (310aa)
Putative HTH-type transcriptional regulator metR n=1 Tax=mine drainage metagenome RepID=E6QU22_9ZZZZ
Putative HTH-type transcriptional regulator metR {ECO:0000313|EMBL:CBI10744.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
LysR family transcriptional regulator
RTP_02272018_0_2um_scaffold_1603_8

Not on your lists

4361..6667
DNA (2307bp) protein (769aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (Methionine synthase,vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) {ECO:0000313|EMBL:CBI10743.1}; EC=2.1.1.14 {ECO:0000313|EMBL:CBI10743.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
5-methyltetrahydropteroyltriglutamate/homocysteine s-methyltransferase (EC:2.1.1.14)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (Methionine synthase,vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) n=1 Tax=mine drainage metagenome RepID=E6QU21_9ZZZZ
RTP_02272018_0_2um_scaffold_1603_9
unknown

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comp(6750..7190)
DNA (441bp) protein (147aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_1603_10
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7316..8116)
DNA (801bp) protein (267aa)
dapB; dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABJ5_9PROT
RTP_02272018_0_2um_scaffold_1603_11
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8119..8607)
DNA (489bp) protein (163aa)
Outer membrane protein assembly factor BamE n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B280_9PROT
SmpA/OmlA
Tax=RBG_16_Gallionellales_56_9_curated
RTP_02272018_0_2um_scaffold_1603_12

Not on your lists

8657..9088
DNA (432bp) protein (144aa)
Ferric uptake regulation protein (Ferric uptake regulator) n=1 Tax=mine drainage metagenome RepID=E6QRI5_9ZZZZ
Ferric uptake regulation protein (Ferric uptake regulator) {ECO:0000313|EMBL:CBI09857.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ferric uptake regulator family protein
RTP_02272018_0_2um_scaffold_1603_13
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9064..9432
DNA (369bp) protein (123aa)
Arsenate reductase and related protein n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QLH7_METS6
arsC; arsenate reductase and-like protein
Arsenate reductase and related {ECO:0000313|EMBL:ACT50179.1}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
RTP_02272018_0_2um_scaffold_1603_14

Not on your lists

9438..10571
DNA (1134bp) protein (378aa)
Succinyl-diaminopimelate desuccinylase (SDAP) {ECO:0000313|EMBL:CBI09859.1}; EC=3.5.1.18 {ECO:0000313|EMBL:CBI09859.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Succinyl-diaminopimelate desuccinylase (SDAP) n=1 Tax=mine drainage metagenome RepID=E6QRI7_9ZZZZ
Succinyl-diaminopimelate desuccinylase
RTP_02272018_0_2um_scaffold_1603_15

Not on your lists

10568..11431
DNA (864bp) protein (288aa)
Putative Site-specific DNA-methyltransferase (Adenine-specific) {ECO:0000313|EMBL:CBI09860.1}; EC=2.1.1.72 {ECO:0000313|EMBL:CBI09860.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (EC:2.1.1.72)
Putative Site-specific DNA-methyltransferase (Adenine-specific) n=1 Tax=mine drainage metagenome RepID=E6QRI8_9ZZZZ
Displaying 16 items

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