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RTP_02272018_0_2um_scaffold_1712

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_1712_1

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comp(43..1704)
DNA (1662bp) protein (554aa)
2-octaprenylphenol hydroxylase (EC:1.14.13.-)
Putative ubiquinone biosynthesis protein n=1 Tax=mine drainage metagenome RepID=E6QS13_9ZZZZ
Putative ubiquinone biosynthesis protein {ECO:0000313|EMBL:CBI10035.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RTP_02272018_0_2um_scaffold_1712_2

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1815..2348
DNA (534bp) protein (178aa)
NLP/P60 n=1 Tax=mine drainage metagenome RepID=E6QS12_9ZZZZ
NLP/P60 {ECO:0000313|EMBL:CBI10034.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
spr; nlp/p60 protein
RTP_02272018_0_2um_scaffold_1712_3
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2358..3707
DNA (1350bp) protein (450aa)
multi-sensor hybrid histidine kinase (EC:2.7.3.-)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003727311
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_1712_4
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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3700..4665
DNA (966bp) protein (322aa)
multi-sensor hybrid histidine kinase (EC:2.7.3.-); K00936 [EC:2.7.3.-] id=12497398 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Sensory/regulatory protein RpfC {ECO:0000313|EMBL:KFB66242.1}; EC=2.7.13.3 {ECO:0000313|EMBL:KFB66242.1};; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
signal transduction histidine kinase
RTP_02272018_0_2um_scaffold_1712_5
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4735..4929)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QTX9_9ZZZZ
hypothetical protein
Tax=CG_Hydro_01
RTP_02272018_0_2um_scaffold_1712_6

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comp(4931..5269)
DNA (339bp) protein (113aa)
(2Fe-2S) ferredoxin n=1 Tax=mine drainage metagenome RepID=E6QTX8_9ZZZZ
(2Fe-2S) ferredoxin {ECO:0000313|EMBL:CBI10700.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
(2Fe-2S)-binding protein
RTP_02272018_0_2um_scaffold_1712_7

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comp(5282..7144)
DNA (1863bp) protein (621aa)
Chaperone protein HscA homolog n=1 Tax=mine drainage metagenome RepID=E6QTX7_9ZZZZ
Chaperone protein HscA homolog {ECO:0000313|EMBL:CBI10699.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hscA; chaperone protein HscA
RTP_02272018_0_2um_scaffold_1712_8

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comp(7147..7680)
DNA (534bp) protein (178aa)
Co-chaperone protein hscB (Hsc20) n=1 Tax=mine drainage metagenome RepID=E6QTX6_9ZZZZ
Co-chaperone protein hscB (Hsc20) {ECO:0000313|EMBL:CBI10698.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
co-chaperone Hsc20
RTP_02272018_0_2um_scaffold_1712_9

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comp(7697..8020)
DNA (324bp) protein (108aa)
Iron-binding protein iscA (Iron-sulfur cluster assembly protein) n=1 Tax=mine drainage metagenome RepID=E6QTX5_9ZZZZ
iron-sulfur cluster assembly protein IscA
Iron-binding protein iscA (Iron-sulfur cluster assembly protein) {ECO:0000313|EMBL:CBI10697.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RTP_02272018_0_2um_scaffold_1712_10
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8030..8425)
DNA (396bp) protein (132aa)
FeS cluster assembly scaffold IscU n=1 Tax=Rhodocyclaceae RepID=UPI0003793829
FeS cluster assembly scaffold IscU {ECO:0000313|EMBL:EGK73385.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
iscU; scaffold protein
RTP_02272018_0_2um_scaffold_1712_11
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8445..9656)
DNA (1212bp) protein (404aa)
cysteine desulfurase n=1 Tax=Leeia oryzae RepID=UPI00035FBCD7
iscS; cysteine desulfurase
Tax=CG_Beta_01
RTP_02272018_0_2um_scaffold_1712_12
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9675..10154)
DNA (480bp) protein (160aa)
Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) RepID=Q7NZ27_CHRVO
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
RTP_02272018_0_2um_scaffold_1712_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10208..10960)
DNA (753bp) protein (251aa)
serine O-acetyltransferase (EC:2.3.1.30)
Serine O-acetyltransferase {ECO:0000313|EMBL:AAZ97115.1}; EC=2.3.1.30 {ECO:0000313|EMBL:AAZ97115.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Serine acetyltransferase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJN7_THIDA
RTP_02272018_0_2um_scaffold_1712_14
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11014..11754)
DNA (741bp) protein (247aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
RNA methyltransferase TrmH, group 1 n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1H357_METFK
RNA methyltransferase TrmH, group 1
RTP_02272018_0_2um_scaffold_1712_15
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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11843..12643
DNA (801bp) protein (267aa)
inositol-1(or 4)-monophosphatase (EC:3.1.3.25)
Inositol-1(Or 4)-monophosphatase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AKE4_9PROT
Tax=CG_Hydro_01
RTP_02272018_0_2um_scaffold_1712_16
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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12716..13942
DNA (1227bp) protein (409aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
Aspartokinase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9Y1_9PROT
aspartate kinase
RTP_02272018_0_2um_scaffold_1712_trna_1
unknown

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14009..14098
DNA (90bp)
transferRNA Ser
RTP_02272018_0_2um_scaffold_1712_trna_2
unknown

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14178..14251
DNA (74bp)
transferRNA Arg
RTP_02272018_0_2um_scaffold_1712_17
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14423..14920
DNA (498bp) protein (166aa)
Putative uncharacterized protein n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1CXE3_MYXXD
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
RTP_02272018_0_2um_scaffold_1712_18
Smithella sp. D17, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(14930..16666)
DNA (1737bp) protein (579aa)
Transporter {ECO:0000313|EMBL:KFZ44125.1}; TaxID=1538639 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. D17.;"
Sulphate transporter id=4130956 bin=GWC2_Geobacteraceae_55_20 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
sulfate transporter
RTP_02272018_0_2um_scaffold_1712_19
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16705..17580)
DNA (876bp) protein (292aa)
Hsp33 protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAP0_9PROT
Hsp33 protein
33 kDa chaperonin {ECO:0000256|SAAS:SAAS00038673}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_02272018_0_2um_scaffold_1712_20
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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17677..19968
DNA (2292bp) protein (764aa)
RNA-binding protein n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI0003770518
Putative transcription accessory protein TEX {ECO:0000313|EMBL:EGK70793.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
transcriptional accessory protein
RTP_02272018_0_2um_scaffold_1712_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(20076..20684)
DNA (609bp) protein (203aa)
3-methyl-adenine DNA glycosylase (EC:3.2.2.21)
3-methyladenine DNA glycosylase II {ECO:0000313|EMBL:AAZ98389.1}; EC=3.2.2.21 {ECO:0000313|EMBL:AAZ98389.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
3-methyladenine DNA glycosylase II n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SG67_THIDA
RTP_02272018_0_2um_scaffold_1712_22
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(20684..21250)
DNA (567bp) protein (189aa)
YceI family protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CRJ9_SIDLE
YceI family protein
YceI family protein {ECO:0000313|EMBL:ADE11585.1}; Flags: Precursor;; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
RTP_02272018_0_2um_scaffold_1712_23
unknown

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comp(21282..21389)
DNA (108bp) protein (36aa)

This feature has no annotations

Displaying 25 items

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