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RTP_02272018_0_2um_scaffold_2176

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_2176_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1..534
DNA (534bp) protein (178aa)
Acetate kinase id=1342792 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
acetate and butyrate kinase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_2176_2

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comp(631..1521)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QSM2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10244.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
RTP_02272018_0_2um_scaffold_2176_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1593..3230)
DNA (1638bp) protein (546aa)
Mercuric reductase MerA id=1311321 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
mercuric reductase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
RTP_02272018_0_2um_scaffold_2176_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3227..3529)
DNA (303bp) protein (101aa)
Mercuric transport protein periplasmic component id=1311320 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
mercuric transport protein periplasmic protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_2176_5
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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3699..4112
DNA (414bp) protein (138aa)
Regulatory protein n=1 Tax=Enterobacter aerogenes RepID=Q46655_ENTAE
transcriptional regulator MerR
Tax=RBG_16_Gamma2_64_11_curated
RTP_02272018_0_2um_scaffold_2176_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4206..4823)
DNA (618bp) protein (206aa)
Two Component Transcriptional Regulator, LuxR family n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF76_THIDA
LuxR family transcriptional regulator
Two Component Transcriptional Regulator, LuxR family {ECO:0000313|EMBL:AAZ98739.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_2176_7
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4844..5650)
DNA (807bp) protein (269aa)
Short chain dehydrogenase family protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K2E5_AZOSB
short chain dehydrogenase
Tax=GWA2_Rhodocyclales_65_20_curated
RTP_02272018_0_2um_scaffold_2176_8

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comp(5674..6330)
DNA (657bp) protein (219aa)
Thiol:disulfide interchange protein dsbA n=1 Tax=mine drainage metagenome RepID=E6QSR0_9ZZZZ
Thiol:disulfide interchange protein dsbA {ECO:0000313|EMBL:CBI10282.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
thiol:disulfide interchange protein DsbA
RTP_02272018_0_2um_scaffold_2176_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6350..6964)
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035DD89D
sporulation domain-containing protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_2176_10

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comp(6977..8719)
DNA (1743bp) protein (581aa)
Arginyl-tRNA synthetase {ECO:0000313|EMBL:CBI10284.1}; EC=6.1.1.19 {ECO:0000313|EMBL:CBI10284.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginyl-tRNA synthetase n=1 Tax=mine drainage metagenome RepID=E6QSR2_9ZZZZ
RTP_02272018_0_2um_scaffold_2176_11
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

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8782..9162
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Thiocapsa marina 5811 RepID=F9UHY9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AKH20553.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
RTP_02272018_0_2um_scaffold_2176_12
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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9159..9494
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00036938BC
UPF0102 protein OYT1_02238 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_2176_13
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9549..10139
DNA (591bp) protein (197aa)
Phosphoheptose isomerase {ECO:0000255|HAMAP-Rule:MF_00067}; EC=5.3.1.28 {ECO:0000255|HAMAP-Rule:MF_00067};; Sedoheptulose 7-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_00067}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
Phosphoheptose isomerase n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=GMHA_AROAE
gmhA; phosphoheptose isomerase
RTP_02272018_0_2um_scaffold_2176_14
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10139..10726
DNA (588bp) protein (196aa)
Putative periplasmic or secreted lipoprotein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAW6_9PROT
putative periplasmic or secreted lipoprotein
Putative periplasmic or secreted lipoprotein {ECO:0000313|EMBL:BAN36310.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_02272018_0_2um_scaffold_2176_15
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10719..11213
DNA (495bp) protein (165aa)
nucleotidyltransferase n=1 Tax=Chitiniphilus shinanonensis RepID=UPI000373E86A
RfaE bifunctional protein {ECO:0000313|EMBL:GAO37123.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
rfaE bifunctional protein
RTP_02272018_0_2um_scaffold_2176_16
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11210..12049
DNA (840bp) protein (280aa)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase {ECO:0000256|HAMAP-Rule:MF_01636}; EC=4.1.1.- {ECO:0000256|HAMAP-Rule:MF_01636};; Polyprenyl p-hydroxybenzoate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01636}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AIJ8_9PROT
3-octaprenyl-4-hydroxybenzoate carboxy-lyase
Displaying 16 items

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