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RTP_02272018_0_2um_scaffold_1417_13

Organism: RTP_02272018_0_2um_Betaproteobacteria_47_68

near complete RP 52 / 55 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 3
Location: comp(11971..12534)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase sigma factor n=1 Tax=mine drainage metagenome RepID=E6QTU4_9ZZZZ similarity UNIREF
DB: UNIREF100
  • Identity: 67.4
  • Coverage: 181.0
  • Bit_score: 247
  • Evalue 6.50e-63
Putative RNA polymerase sigma factor {ECO:0000313|EMBL:CBI10666.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.4
  • Coverage: 181.0
  • Bit_score: 247
  • Evalue 9.20e-63
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 62.0
  • Coverage: 184.0
  • Bit_score: 225
  • Evalue 9.80e-57

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Taxonomy

mine drainage metagenome

Sequences

DNA sequence
Length: 564
GTGGCAAATATAAACACGTTAGAACTGTTTTTGGCTGGGGTAGAGCGTAGGGCTTATCGTCAAGCGGCATTTGCAGTGCGTGATGATCAGGCGGCGTTGGATATCGTTCAAGATTCGATGATGAAGCTGGCGGAAAAATATAGTAACCACCCACCCGCCGAGTTTCCTATGTTATTCCAGCGCATTTTGCAAAATACGATACGTGATTATTACCGTCGTCAAAAAATACGGAATTATTGGGTCACGGCGGTGTCTTTTATGACACCTGGGCGTAATGCTGAAGATGATGAAGAAGCATTGGAATATGATCAGGCTGCAGACGAAAAAAACAGTCCTGTAAATAGCCTGATAACCGGCAAGAATTTTGCTTTGATTGAAGCTGCTATAGAAAAATTGTCTGCACGTCAACGTGAAGCCTTCCTACTGCGTTATTGGGAGGAGATGGATATAGCAGAAACAGCACAAGTGATGGGTTGCTCCGAAGGCAGCGTCAAAACACACTGTTCACGTGCAGTACAAGCACTTGCTGCGATGCTGAAAGAGAAAGGGATGACCGATGGATAA
PROTEIN sequence
Length: 188
VANINTLELFLAGVERRAYRQAAFAVRDDQAALDIVQDSMMKLAEKYSNHPPAEFPMLFQRILQNTIRDYYRRQKIRNYWVTAVSFMTPGRNAEDDEEALEYDQAADEKNSPVNSLITGKNFALIEAAIEKLSARQREAFLLRYWEEMDIAETAQVMGCSEGSVKTHCSRAVQALAAMLKEKGMTDG*