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RTP_02272018_0_2um_scaffold_1417

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_1417_1
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..165)
DNA (165bp) protein (55aa)
Transmembrane protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IYF2_9GAMM
Transmembrane protein {ECO:0000313|EMBL:EGW21174.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
transmembrane protein
RTP_02272018_0_2um_scaffold_1417_2
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(194..400)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri KOS6 RepID=K6CDM1_PSEST
Uncharacterized protein {ECO:0000313|EMBL:EWC39670.1}; TaxID=1218352 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri KOS6.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_1417_3
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

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comp(390..2129)
DNA (1740bp) protein (580aa)
gamma-glutamyltransferase 1 (EC:2.3.2.2)
Gamma-glutamyltransferase 1 n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WJA1_9CYAN
Gamma-glutamyltransferase {ECO:0000313|EMBL:KIF18803.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
RTP_02272018_0_2um_scaffold_1417_4
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2183..3868)
DNA (1686bp) protein (562aa)
Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SJ14_HAHCH
signal transduction protein
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
RTP_02272018_0_2um_scaffold_1417_5
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

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comp(3899..4318)
DNA (420bp) protein (140aa)
Response regulator receiver id=4691728 bin=GWA2__Bacteriovorax-rel_49_15 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2__Bacteriovorax-rel_49_15 organism_group=Deltaproteobacteria
response regulator
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
RTP_02272018_0_2um_scaffold_1417_6
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4342..5712)
DNA (1371bp) protein (457aa)
hypothetical protein n=2 Tax=Chlorogloeopsis RepID=UPI000372CED4
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
RTP_02272018_0_2um_scaffold_1417_7
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5709..6245)
DNA (537bp) protein (179aa)
Uncharacterized protein n=3 Tax=Caldicellulosiruptor RepID=A4XLU6_CALS8
hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
RTP_02272018_0_2um_scaffold_1417_8
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6265..6489)
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=WS1 bacterium JGI 0000059-K21 RepID=UPI0003631DD0
NAD(FAD)-dependent dehydrogenase
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
RTP_02272018_0_2um_scaffold_1417_9
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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6718..10677
DNA (3960bp) protein (1320aa)
Phosphoribosylformylglycinamidine synthase {ECO:0000256|HAMAP-Rule:MF_00419}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00419};; Short=FGAMS {ECO:0000256|HAMAP-Rule:MF_00419};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00419};; Formylglycinamide ribonucleotide amidotransferase {ECO:0000256|HAMAP-Rule:MF_00419}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AC59_9PROT
RTP_02272018_0_2um_scaffold_1417_10

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10732..11118
DNA (387bp) protein (129aa)
Nitrogen-fixing NifU-like (Modular protein) n=1 Tax=mine drainage metagenome RepID=E6QTU8_9ZZZZ
Nitrogen-fixing NifU-like (Modular protein) {ECO:0000313|EMBL:CBI10670.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
nitrogen-fixing NifU domain-containing protein
RTP_02272018_0_2um_scaffold_1417_11

Not on your lists

comp(11197..11631)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QTU6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10668.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_1417_12

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comp(11607..11978)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QTU5_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10667.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RTP_02272018_0_2um_scaffold_1417_13

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comp(11971..12534)
DNA (564bp) protein (188aa)
Putative RNA polymerase sigma factor n=1 Tax=mine drainage metagenome RepID=E6QTU4_9ZZZZ
Putative RNA polymerase sigma factor {ECO:0000313|EMBL:CBI10666.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ECF subfamily RNA polymerase sigma-24 subunit
RTP_02272018_0_2um_scaffold_1417_14
unknown

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comp(12537..12776)
DNA (240bp) protein (80aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_1417_15

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comp(12776..13075)
DNA (300bp) protein (100aa)
Putative Peptidase S49 n=1 Tax=mine drainage metagenome RepID=E6QTU3_9ZZZZ
Putative Peptidase S49 {ECO:0000313|EMBL:CBI10665.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
peptidase S49
Displaying 15 items

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