ggKbase home page

RTP_082018_0_1um_scaffold_59

Search features with annotation key words

Displaying items 1-30 of 274 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_082018_0_1um_scaffold_59_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..181)
DNA (180bp) protein (60aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SL33_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96586.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_59_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(178..987)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035EC89D
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_59_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1138..2508
DNA (1371bp) protein (457aa)
coproporphyrinogen III oxidase (EC:1.3.99.22)
coproporphyrinogen III oxidase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037693B3
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_59_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2691..4592
DNA (1902bp) protein (634aa)
Putative diguanylate cyclase (GGDEF domain) id=1337105 bin=GWE1_T_denit_62_9 species=Marinobacter nanhaiticus genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
diguanylate cyclase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_59_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4615..4914)
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036918FE
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_59_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5046..5180)
DNA (135bp) protein (45aa)
hypothetical protein id=1337107 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_59_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5182..5706)
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036EBCB3
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_59_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5712..7142)
DNA (1431bp) protein (477aa)
Probable iron-sulfur 4Fe-4S ferredoxin transmembrane protein id=1337109 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
iron-sulfur 4Fe-4S ferredoxin transmembrane protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_59_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7230..8237)
DNA (1008bp) protein (336aa)
Cbb3-type cytochrome c oxidase subunit n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SL26_THIDA
cytochrome c oxidase cbb3-type subunit III
Cbb3-type cytochrome c oxidase subunit {ECO:0000256|PIRNR:PIRNR000006}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_59_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8234..8398)
DNA (165bp) protein (55aa)
Cytochrome c oxidase, subunit CcoQ id=1337111 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
cytochrome c oxidase subunit CcoQ
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_59_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8405..9010)
DNA (606bp) protein (202aa)
peptidase S41 n=1 Tax=Thiobacillus denitrificans RepID=UPI00037131F6
cytochrome C oxidase, mono-heme subunit/FixO
Cytochrome C oxidase, mono-heme subunit/FixO {ECO:0000313|EMBL:AAZ96595.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_59_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9022..10461)
DNA (1440bp) protein (480aa)
cytochrome oxidase subunit I n=1 Tax=Thiobacillus thioparus RepID=UPI00035F2186
cytochrome c oxidase cbb3-type subunit I
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_59_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10768..11850)
DNA (1083bp) protein (361aa)
L-alanine dehydrogenase (EC:1.4.1.1)
alanine dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI00036495D6
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_59_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11917..13170)
DNA (1254bp) protein (418aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000367E029
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_59_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13167..14177)
DNA (1011bp) protein (337aa)
dihydroorotate dehydrogenase 2 (EC:1.3.3.1)
Dihydroorotate dehydrogenase (quinone) id=1367850 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_59_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14366..15523
DNA (1158bp) protein (386aa)
serine-type D-ala-D-ala-carboxypeptidase (EC:3.4.16.4)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000377D092
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_59_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15674..16762
DNA (1089bp) protein (363aa)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_59_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16914..17582
DNA (669bp) protein (223aa)
Variant pep-cterm putative exosortase signal, roseobacter type domain protein id=1360590 bin=GWE1_T_denit_62_9 species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
PEP motif putative anchor domain-containing protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_59_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17743..20769)
DNA (3027bp) protein (1009aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
pyruvate dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI00035E3DE3
Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase E3 component {ECO:0000313|EMBL:AAZ96605.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_59_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20803..21174)
DNA (372bp) protein (124aa)
hypothetical protein id=12494007 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96606.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_59_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21206..22189)
DNA (984bp) protein (328aa)
Pyruvate dehydrogenase E1 beta subunit id=1326796 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
pyruvate dehydrogenase E1 subunit beta
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_59_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22210..23211)
DNA (1002bp) protein (334aa)
Dehydrogenase complex, E1 component, alpha subunit id=1326795 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
dehydrogenase complex, E1 component subunit alpha
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_59_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23324..24820
DNA (1497bp) protein (499aa)
leucyl aminopeptidase (EC:3.4.11.1)
peptidase M17 n=1 Tax=Thiobacillus denitrificans RepID=UPI00037AEBBB
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_59_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24844..25494
DNA (651bp) protein (217aa)
ribosomal large subunit pseudouridine synthase A (EC:5.4.99.-)
Pseudouridine synthase id=1326793 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_59_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25528..26808)
DNA (1281bp) protein (427aa)
C4-dicarboxylate transporter id=1326790 bin=GWE1_T_denit_62_9 species=Advenella kashmirensis genus=Advenella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
C4-dicarboxylate transporter
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_59_26
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26805..27341)
DNA (537bp) protein (179aa)
Tripartite ATP-independent periplasmic transporter DctQ component n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VCW2_RHOPX
TRAP transporter, DctQ subunit
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_082018_0_1um_scaffold_59_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27363..28346)
DNA (984bp) protein (328aa)
C4-dicarboxylate-binding protein id=1326787 bin=GWE1_T_denit_62_9 species=unknown genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
C4-dicarboxylate-binding protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_59_28
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28525..30183)
DNA (1659bp) protein (553aa)
acetolactate synthase, large subunit (EC:2.2.1.6)
acetolactate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CACE5
Acetolactate synthase large subunit {ECO:0000313|EMBL:AAZ96615.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_59_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30398..30985)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037140DD
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_59_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31146..32261)
DNA (1116bp) protein (372aa)
transaldolase (EC:2.2.1.2)
transaldolase n=1 Tax=Thiobacillus thioparus RepID=UPI00037FC0AF
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 274 in total

View Taxonomy