ggKbase home page

RTP_082018_0_1um_scaffold_429

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_082018_0_1um_scaffold_429_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1315
DNA (1314bp) protein (438aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035F36E0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96586.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_082018_0_1um_scaffold_429_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1329..3614
DNA (2286bp) protein (762aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000360E695
RND efflux transporter
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_429_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3601..4179)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000375CB46
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_429_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4176..6995)
DNA (2820bp) protein (940aa)
phosphoenolpyruvate carboxylase (EC:4.1.1.31)
Phosphoenolpyruvate carboxylase id=1345999 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_429_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7053..11015)
DNA (3963bp) protein (1321aa)
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00419};; Short=FGAMS {ECO:0000256|HAMAP-Rule:MF_00419};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474};; Formylglycinamide ribonucleotide amidotransferase {ECO:0000256|HAMAP-Rule:MF_00419}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
phosphoribosylformylglycinamidine synthase n=1 Tax=Thiobacillus thioparus RepID=UPI0003757261
RTP_082018_0_1um_scaffold_429_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11080..11286)
DNA (207bp) protein (69aa)
Putative uncharacterized protein id=1337189 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_429_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11361..12158)
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036FA27B
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_429_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12349..13776
DNA (1428bp) protein (476aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036EF88F
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_429_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13752..14621)
DNA (870bp) protein (290aa)
UDP-glucose pyrophosphorylase (EC:2.7.7.9)
UTP--glucose-1-phosphate uridylyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00035C40E2
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_429_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14642..16732)
DNA (2091bp) protein (697aa)
NAD-dependent DNA ligase (EC:6.5.1.2)
NAD-dependent DNA ligase LigA n=1 Tax=Thiobacillus thioparus RepID=UPI00036B1C19
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_082018_0_1um_scaffold_429_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16732..17955)
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003639630
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_429_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17948..18307)
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000371F22D
cell division protein FtsB
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_429_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18285..19568)
DNA (1284bp) protein (428aa)
eno; phosphopyruvate hydratase (EC:4.2.1.11)
Enolase id=1375314 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_429_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19607..20449)
DNA (843bp) protein (281aa)
2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Thiobacillus thioparus RepID=UPI00037A2605
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_429_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20446..22086)
DNA (1641bp) protein (547aa)
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthase {ECO:0000255|HAMAP-Rule:MF_01227}; EC=6.3.4.2 {ECO:0000255|HAMAP-Rule:MF_01227};; CTP synthetase {ECO:0000255|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000255|HAMAP-Rule:MF_01227}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
CTP synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI00037194AE
RTP_082018_0_1um_scaffold_429_16
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22175..23455)
DNA (1281bp) protein (427aa)
cycH_[H]; Cytochrome c heme lyase subunit CcmH id=12494448 bin=THIO_HI species=Thioalkalivibrio nitratireducens genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=CG_Hydro_01
RTP_082018_0_1um_scaffold_429_17
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23452..23919)
DNA (468bp) protein (156aa)
cytochrome C biogenesis protein id=12494449 bin=THIO_HI species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
cytochrome C biogenesis protein
Tax=CG_Hydro_01
RTP_082018_0_1um_scaffold_429_18
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23916..25895)
DNA (1980bp) protein (660aa)
ccmF_[H]; Cytochrome c heme lyase subunit CcmF id=12494451 bin=THIO_HI species=Thioalkalivibrio thiocyanoxidans genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
heme lyase subunit CcmF
Tax=CG_Hydro_01
RTP_082018_0_1um_scaffold_429_19
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(26076..27845)
DNA (1770bp) protein (590aa)
nir; eight-heme nitrite reductase precursor (EC:1.7.2.2)
Cytochrome c family protein id=4141302 bin=GWF2_Nitrospirae_44_13 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=GWF2_Nitrospirae_44_13_curated
RTP_082018_0_1um_scaffold_429_20
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27876..29177)
DNA (1302bp) protein (434aa)
Sulfide dehydrogenase (Flavocytochrome), flavoprotein subunit {ECO:0000313|EMBL:EIJ33855.1}; EC=1.8.2.- {ECO:0000313|EMBL:EIJ33855.1};; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
Sulfide dehydrogenase (Flavocytochrome), flavoprotein subunit n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BR62_9GAMM
sulfide dehydrogenase (flavocytochrome), flavoprotein subunit
RTP_082018_0_1um_scaffold_429_21
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29188..29760)
DNA (573bp) protein (191aa)
Cytochrome c553 n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3Y9N2_THIV6
cytochrome c553
Cytochrome c553 {ECO:0000313|EMBL:AFL73700.1}; Flags: Precursor;; TaxID=765911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium; violascens).;"
RTP_082018_0_1um_scaffold_429_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29882..30595)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037553DD
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_429_23
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30748..33042)
DNA (2295bp) protein (765aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21R24_RHOFD
Uncharacterized protein {ECO:0000313|EMBL:GAO36506.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
RTP_082018_0_1um_scaffold_429_24
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33058..34116)
DNA (1059bp) protein (353aa)
Decaheme c-type cytochrome, DmsE family n=1 Tax=Azoarcus sp. KH32C RepID=H0PUP3_9RHOO
decaheme c-type cytochrome, DmsE family
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
RTP_082018_0_1um_scaffold_429_25
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34719..35408
DNA (690bp) protein (230aa)
Crp/Fnr family transcriptional regulator n=1 Tax=Thauera phenylacetica B4P RepID=N6ZUG4_9RHOO
Crp/Fnr family transcriptional regulator
Crp/Fnr family transcriptional regulator {ECO:0000313|EMBL:BAO28657.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
RTP_082018_0_1um_scaffold_429_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35427..37772)
DNA (2346bp) protein (782aa)
phosphoenolpyruvate synthase (EC:2.7.9.2)
Phosphoenolpyruvate synthase id=1370568 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_429_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37783..38562
DNA (780bp) protein (260aa)
Putative phosphoenolpyruvate synthase regulatory protein id=1370567 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_429_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38646..40814
DNA (2169bp) protein (723aa)
Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) id=1370566 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
diguanylate cyclase/phosphodiesterase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_082018_0_1um_scaffold_429_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40826..41143
DNA (318bp) protein (106aa)
PhnO-like protein id=12498028 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_082018_0_1um_scaffold_429_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41161..41946)
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003641781
tRNA/rRNA methyltransferase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 58 in total

View Taxonomy