ggKbase home page

RTP_11222018_0_1um_scaffold_2016

Search features with annotation key words

Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_2016_1
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..630
DNA (630bp) protein (210aa)
Flagellar P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Basal body P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Flags: Precursor;; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
flagellar P-ring family protein
Flagellar P-ring protein id=1344993 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
RTP_11222018_0_1um_scaffold_2016_2
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

638..1492
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0003002387
Flagellar rod assembly protein FlgJ {ECO:0000313|EMBL:KIF82156.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
mannosyl-glycoprotein endo-beta-N-acetylglucosamidase
RTP_11222018_0_1um_scaffold_2016_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1578..3521
DNA (1944bp) protein (648aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000362AE76
flgK; flagellar hook-associated protein FlgK
Flagellar hook-associated protein {ECO:0000313|EMBL:AAZ97581.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_11222018_0_1um_scaffold_2016_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3533..4477
DNA (945bp) protein (315aa)
flgL; flagellar hook-associated protein FlgL; K02397 flagellar hook-associated protein 3 FlgL id=12493522 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
flgL; flagellar hook-associated protein FlgL
Flagellin, flagellar hook-associated protein 3 FlgL {ECO:0000313|EMBL:AAZ97580.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_11222018_0_1um_scaffold_2016_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4820..6811
DNA (1992bp) protein (664aa)
signal transduction histidine kinase CheA-like protein; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] id=12498524 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
signal transduction histidine kinase CheA-like protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_2016_6

Not on your lists

6822..7304
DNA (483bp) protein (161aa)
Chemotaxis protein CheW n=1 Tax=mine drainage metagenome RepID=E6QR48_9ZZZZ
Chemotaxis protein CheW {ECO:0000313|EMBL:CBI09719.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
cheW4; chemotaxis protein CheW
RTP_11222018_0_1um_scaffold_2016_7

Not on your lists

7362..8354
DNA (993bp) protein (331aa)
Putative Methyl-accepting chemotaxis protein n=1 Tax=mine drainage metagenome RepID=E6QR49_9ZZZZ
Putative Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CBI09720.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
tar; methyl-accepting chemotaxis transducer transmembrane protein
Displaying 7 items

View Taxonomy