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RTP_11222018_0_1um_scaffold_2200

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_2200_1
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..853)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FAB8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX64604.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
Lead, cadmium, zinc and mercury transporting ATPase
RTP_11222018_0_1um_scaffold_2200_2
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(941..1993)
DNA (1053bp) protein (351aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1CAH7_SPHTD
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein {ECO:0000313|EMBL:ACZ40820.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
RTP_11222018_0_1um_scaffold_2200_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2069..2572)
DNA (504bp) protein (168aa)
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QG95_NITHX
pyridoxamine 5'-phosphate oxidase-like FMN-binding protein
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding {ECO:0000313|EMBL:ABE64752.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
RTP_11222018_0_1um_scaffold_2200_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2645..3118)
DNA (474bp) protein (158aa)
Putative uncharacterized protein n=1 Tax=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) RepID=Q30QZ4_SULDN
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_2200_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3155..3385)
DNA (231bp) protein (77aa)
Uncharacterized protein id=1351596 bin=GWE1_T_denit_62_9 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rhodanese-like protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_2200_6
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3482..3838)
DNA (357bp) protein (119aa)
Twin-arginine translocation pathway signal id=4961695 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
RTP_11222018_0_1um_scaffold_2200_7
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(3981..4199)
DNA (219bp) protein (73aa)
seg id=14426769 bin=bin1_lowGC species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=bin1_lowGC organism_group=Unknown_CP
Tax=CSP1_2_Dadabacteria
RTP_11222018_0_1um_scaffold_2200_8
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4370..5983)
DNA (1614bp) protein (538aa)
Bilirubin oxidase (EC:1.3.3.5)
Bilirubin oxidase {ECO:0000313|EMBL:ABM39790.1}; EC=1.3.3.5 {ECO:0000313|EMBL:ABM39790.1};; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
Bilirubin oxidase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VVW2_POLNA
RTP_11222018_0_1um_scaffold_2200_9
Massilia consociata, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6082..6561)
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI000344B895
Uncharacterized protein {ECO:0000313|EMBL:KFI05384.1}; TaxID=760117 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia consociata.;"
conserved hypothetical protein
RTP_11222018_0_1um_scaffold_2200_10
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6568..8121)
DNA (1554bp) protein (518aa)
Lytic transglycosylase catalytic subunit n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABT7_9PROT
lytic transglycosylase catalytic subunit
Lytic transglycosylase catalytic subunit {ECO:0000313|EMBL:BAN34998.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_11222018_0_1um_scaffold_2200_11
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8171..8938)
DNA (768bp) protein (256aa)
hydroxyacylglutathione hydrolase (EC:3.1.2.6)
Hydroxyacylglutathione hydrolase {ECO:0000255|HAMAP-Rule:MF_01374}; EC=3.1.2.6 {ECO:0000255|HAMAP-Rule:MF_01374};; Glyoxalase II {ECO:0000255|HAMAP-Rule:MF_01374}; Short=Glx II {ECO:0000255|HAMAP-Rule:MF_01374};; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eutropha (strain C91).;"
Hydroxyacylglutathione hydrolase n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=GLO2_NITEC
RTP_11222018_0_1um_scaffold_2200_12
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9054..9770
DNA (717bp) protein (239aa)
methyl-transferase id=12498298 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
type 11 methyltransferase
Tax=CG_Beta_01
RTP_11222018_0_1um_scaffold_2200_13

Not on your lists

9751..10212
DNA (462bp) protein (154aa)
Ribonuclease HI (RNase HI) (Ribonuclease H) (RNase H) {ECO:0000313|EMBL:CBI10648.1}; EC=3.1.26.4 {ECO:0000313|EMBL:CBI10648.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RNaseH ribonuclease n=1 Tax=Methylophilus RepID=UPI000382473C
rnhA; ribonuclease H
RTP_11222018_0_1um_scaffold_2200_14

Not on your lists

10235..12085
DNA (1851bp) protein (617aa)
ABC transporter ATP-binding protein Uup n=1 Tax=mine drainage metagenome RepID=E6QTS7_9ZZZZ
ABC transporter ATP-binding protein Uup {ECO:0000313|EMBL:CBI10649.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ABC transporter-like protein
RTP_11222018_0_1um_scaffold_2200_15
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12175..12891)
DNA (717bp) protein (239aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC:2.3.1.117)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013419}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013404};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; TaxID=572477 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
PREDICTED: uncharacterized protein LOC102326330 n=1 Tax=Pantholops hodgsonii RepID=UPI0003C14B85
RTP_11222018_0_1um_scaffold_2200_16
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12902..14095)
DNA (1194bp) protein (398aa)
succinyldiaminopimelate aminotransferase n=1 Tax=Methylotenera RepID=UPI000375C375
Succinyldiaminopimelate aminotransferase {ECO:0000313|EMBL:GAO35695.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
succinyldiaminopimelate transaminase
RTP_11222018_0_1um_scaffold_2200_17
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14129..15019
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B4F5_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
RTP_11222018_0_1um_scaffold_2200_18
RIFOXYB12_FULL_Gallionellales_54_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15016..15384
DNA (369bp) protein (123aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SGS2_GALCS
Glyoxalase/bleomycin resistance protein/dioxygenase
Tax=RIFOXYB12_FULL_Gallionellales_54_9_curated
RTP_11222018_0_1um_scaffold_2200_19
Candidatus Methylopumilus turicensis, Candidatus Methylopumilus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15469..16740
DNA (1272bp) protein (424aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037DA80C
CHU large protein; putative phytase (fragment)
CHU large protein putative phytase {ECO:0000313|EMBL:CEN55552.1}; TaxID=1581680 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium MMS-10A-171.;"
RTP_11222018_0_1um_scaffold_2200_20
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16962..17603
DNA (642bp) protein (214aa)
Demethylmenaquinone methyltransferase {ECO:0000313|EMBL:KFB73505.1}; EC=2.1.1.163 {ECO:0000313|EMBL:KFB73505.1};; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
Type 11 methyltransferase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AD11_9PROT
type 11 methyltransferase
RTP_11222018_0_1um_scaffold_2200_21
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17611..18510
DNA (900bp) protein (300aa)
Transcriptional regulator, MerR family n=1 Tax=Azoarcus sp. KH32C RepID=H0Q6B8_9RHOO
transcriptional regulator, MerR family
Transcriptional regulator, MerR family {ECO:0000313|EMBL:BAL27531.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
RTP_11222018_0_1um_scaffold_2200_22
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18507..19178)
DNA (672bp) protein (224aa)
Cation efflux system protein n=1 Tax=Beggiatoa sp. PS RepID=A7BPH3_9GAMM
CzcA family heavy metal efflux pump
Tax=CG_Hydro_01
Displaying 22 items

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