ggKbase home page

RTP_11222018_0_1um_scaffold_2684

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_2684_1

Not on your lists

3..1961
DNA (1959bp) protein (653aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (Methionine synthase,vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) {ECO:0000313|EMBL:CBI10743.1}; EC=2.1.1.14 {ECO:0000313|EMBL:CBI10743.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (EC:2.1.1.14)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (Methionine synthase,vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) n=1 Tax=mine drainage metagenome RepID=E6QU21_9ZZZZ
RTP_11222018_0_1um_scaffold_2684_2
unknown

Not on your lists

comp(2044..2484)
DNA (441bp) protein (147aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_2684_3
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2610..3410)
DNA (801bp) protein (267aa)
dapB; dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABJ5_9PROT
RTP_11222018_0_1um_scaffold_2684_4
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3413..3901)
DNA (489bp) protein (163aa)
Outer membrane protein assembly factor BamE n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZJ69_9PROT
SmpA/OmlA domain-containing protein
Tax=RBG_16_Gallionellales_56_9_curated
RTP_11222018_0_1um_scaffold_2684_5

Not on your lists

3951..4382
DNA (432bp) protein (144aa)
Ferric uptake regulation protein (Ferric uptake regulator) n=1 Tax=mine drainage metagenome RepID=E6QRI5_9ZZZZ
Ferric uptake regulation protein (Ferric uptake regulator) {ECO:0000313|EMBL:CBI09857.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ferric uptake regulator family protein
RTP_11222018_0_1um_scaffold_2684_6
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4358..4726
DNA (369bp) protein (123aa)
Arsenate reductase and related protein n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QLH7_METS6
arsC; arsenate reductase and-like protein
Arsenate reductase and related {ECO:0000313|EMBL:ACT50179.1}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
RTP_11222018_0_1um_scaffold_2684_7

Not on your lists

4732..5865
DNA (1134bp) protein (378aa)
Succinyl-diaminopimelate desuccinylase (SDAP) {ECO:0000313|EMBL:CBI09859.1}; EC=3.5.1.18 {ECO:0000313|EMBL:CBI09859.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Succinyl-diaminopimelate desuccinylase (SDAP) n=1 Tax=mine drainage metagenome RepID=E6QRI7_9ZZZZ
Succinyl-diaminopimelate desuccinylase
RTP_11222018_0_1um_scaffold_2684_8

Not on your lists

5862..6773
DNA (912bp) protein (304aa)
Putative Site-specific DNA-methyltransferase (Adenine-specific) {ECO:0000313|EMBL:CBI09860.1}; EC=2.1.1.72 {ECO:0000313|EMBL:CBI09860.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (EC:2.1.1.72)
Putative Site-specific DNA-methyltransferase (Adenine-specific) n=1 Tax=mine drainage metagenome RepID=E6QRI8_9ZZZZ
RTP_11222018_0_1um_scaffold_2684_9
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6961..8211)
DNA (1251bp) protein (417aa)
hypothetical protein n=1 Tax=Nevskia ramosa RepID=UPI0003B69790
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_11222018_0_1um_scaffold_2684_10
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8484..8987)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAC0_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN35595.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_11222018_0_1um_scaffold_2684_11
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8997..9233)
DNA (237bp) protein (79aa)
Serine/threonine protein kinase domain-containing protein n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0B584_ALCFA
protein kinase
Tax=RBG_16_Betaproteobacteria_58_11_curated
Displaying 11 items

View Taxonomy