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RTP_11222018_0_1um_scaffold_2973

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_2973_1
Marichromatium purpuratum, Marichromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..137)
DNA (135bp) protein (45aa)
Probable glycine dehydrogenase (decarboxylating) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00015358}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00022796};; Glycine cleavage system P-protein subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine decarboxylase subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine dehydrogenase (aminomethyl-transferring) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; TaxID=765910 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Marichromatium.;" source="Marichromatium purpuratum 984.;"
Probable glycine dehydrogenase [decarboxylating] subunit 1 n=1 Tax=Marichromatium purpuratum 984 RepID=F9TYD7_MARPU
glycine dehydrogenase subunit 1
RTP_11222018_0_1um_scaffold_2973_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(161..550)
DNA (390bp) protein (130aa)
Glycine cleavage system H protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=GCSH_THIDA
glycine cleavage system protein H
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_2973_3
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(597..1673)
DNA (1077bp) protein (359aa)
gcvT; glycine cleavage system aminomethyltransferase T (EC:2.1.2.10)
Aminomethyltransferase {ECO:0000256|HAMAP-Rule:MF_00259}; EC=2.1.2.10 {ECO:0000256|HAMAP-Rule:MF_00259};; Glycine cleavage system T protein {ECO:0000256|HAMAP-Rule:MF_00259}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
Aminomethyltransferase n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=GCST_NITEC
RTP_11222018_0_1um_scaffold_2973_4
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1693..2625)
DNA (933bp) protein (311aa)
lipoyl synthase (EC:2.8.1.8)
Lipoyl synthase id=4099734 bin=GWA2_Ignavibacteria_55_11 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
Tax=CG_Hydro_01
RTP_11222018_0_1um_scaffold_2973_5

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comp(2969..3646)
DNA (678bp) protein (226aa)
Lipoprotein releasing system ATP-binding protein LolD {ECO:0000313|EMBL:CBI10037.1}; EC=3.6.3.- {ECO:0000313|EMBL:CBI10037.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Lipoprotein releasing system ATP-binding protein LolD n=1 Tax=mine drainage metagenome RepID=E6QS15_9ZZZZ
lolD; lolD; lipoprotein releasing system ATP-binding ABC transporter
RTP_11222018_0_1um_scaffold_2973_6

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comp(3639..4883)
DNA (1245bp) protein (415aa)
Putative Lipoprotein-releasing system transmembrane protein lolE n=1 Tax=mine drainage metagenome RepID=E6QS14_9ZZZZ
Putative Lipoprotein-releasing system transmembrane protein lolE {ECO:0000313|EMBL:CBI10036.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
LolC/E family lipoprotein releasing system transmembrane protein
RTP_11222018_0_1um_scaffold_2973_7

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comp(4937..5323)
DNA (387bp) protein (129aa)
Metallo-beta-lactamase family protein {ECO:0000313|EMBL:CBI10407.1}; EC=3.1.2.6 {ECO:0000313|EMBL:CBI10407.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Metallo-beta-lactamase family protein n=1 Tax=mine drainage metagenome RepID=E6QT35_9ZZZZ
rhodanese domain-containing protein
RTP_11222018_0_1um_scaffold_2973_8

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5375..6307
DNA (933bp) protein (311aa)
DNA helicase II {ECO:0000313|EMBL:CBI10408.1}; EC=3.6.1.- {ECO:0000313|EMBL:CBI10408.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
DNA helicase II n=1 Tax=mine drainage metagenome RepID=E6QT36_9ZZZZ
UvrD/REP helicase
RTP_11222018_0_1um_scaffold_2973_9
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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6378..7526
DNA (1149bp) protein (383aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
UvrD/REP helicase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAN2_9PROT
UvrD/REP helicase
RTP_11222018_0_1um_scaffold_2973_10
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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7547..7960
DNA (414bp) protein (138aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UUZ4_ROSS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ90447.1}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
RTP_11222018_0_1um_scaffold_2973_11
Erwinia pyrifoliae, Erwinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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7957..9246
DNA (1290bp) protein (430aa)
Conserved uncharacterized protein n=2 Tax=Erwinia pyrifoliae RepID=D0FUM7_ERWPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAY75183.1}; TaxID=644651 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Erwinia.;" source="Erwinia pyrifoliae (strain DSM 12163 / CIP 106111 / Ep16/96).;"
RTP_11222018_0_1um_scaffold_2973_12
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9267..10763
DNA (1497bp) protein (499aa)
cobalamin ABC transporter ATPase n=1 Tax=Lamprocystis purpurea RepID=UPI000375BE87
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACO77956.1}; TaxID=322710 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii (strain DJ / ATCC BAA-1303).;"
RTP_11222018_0_1um_scaffold_2973_13

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10879..11376
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QRX8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10000.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
Displaying 13 items

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