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RTP_11222018_0_1um_scaffold_423

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_423_1

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comp(57..773)
DNA (717bp) protein (239aa)
Type III pantothenate kinase (Pantothenic acid kinase) (PanK-III) {ECO:0000313|EMBL:CBI11766.1}; EC=2.7.1.33 {ECO:0000313|EMBL:CBI11766.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
pantothenate kinase (EC:2.7.1.33)
Type III pantothenate kinase (Pantothenic acid kinase) (PanK-III) n=1 Tax=mine drainage metagenome RepID=E6QWZ2_9ZZZZ
RTP_11222018_0_1um_scaffold_423_2

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comp(770..1837)
DNA (1068bp) protein (356aa)
Biotin--acetyl-CoA-carboxylase ligase {ECO:0000313|EMBL:CBI11767.1}; EC=6.3.4.15 {ECO:0000313|EMBL:CBI11767.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Biotin--acetyl-CoA-carboxylase ligase n=1 Tax=mine drainage metagenome RepID=E6QWZ3_9ZZZZ
biotin/acetyl-CoA-carboxylase ligase
RTP_11222018_0_1um_scaffold_423_3

Not on your lists

1838..2218
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QWZ4_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI11768.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RTP_11222018_0_1um_scaffold_423_4

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2256..2759
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QWZ5_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI11769.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
cyclic nucleotide-binding protein
RTP_11222018_0_1um_scaffold_423_5
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2795..3481)
DNA (687bp) protein (229aa)
PilZ domain-containing protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QIP2_AZOSU
PilZ domain-containing protein
PilZ domain-containing protein {ECO:0000313|EMBL:AEV27502.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
RTP_11222018_0_1um_scaffold_423_6
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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3524..4528
DNA (1005bp) protein (335aa)
Putative transmembrane protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q479K0_DECAR
Putative virion core protein (Lumpy skin disease virus) {ECO:0000313|EMBL:EXI87220.1}; TaxID=1454005 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
transmembrane protein
RTP_11222018_0_1um_scaffold_423_7
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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4536..6464
DNA (1929bp) protein (643aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q479K1_DECAR
Uncharacterized protein {ECO:0000313|EMBL:CDI02524.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_423_8
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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6464..6628
DNA (165bp) protein (55aa)
Uncharacterized protein {ECO:0000313|EMBL:CDI02525.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
RTP_11222018_0_1um_scaffold_423_9
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6641..6856
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=uncultured prokaryote AT3 RepID=D3W8H1_9ZZZZ
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
RTP_11222018_0_1um_scaffold_423_10
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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6849..8378
DNA (1530bp) protein (510aa)
Spermidine synthase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RLJ7_ACCPU
spermidine synthase
Polyamine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Putrescine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Spermidine synthase {ECO:0000256|HAMAP-Rule:MF_00198}; Flags: Precursor;; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
RTP_11222018_0_1um_scaffold_423_11
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

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8392..9708
DNA (1317bp) protein (439aa)
Twin-arginine translocation pathway signal n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RLJ8_ACCPU
twin-arginine translocation pathway signal
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
RTP_11222018_0_1um_scaffold_423_12
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

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9663..9911
DNA (249bp) protein (83aa)
Twin-arginine translocation pathway signal n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q479N7_DECAR
twin-arginine translocation pathway signal
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
RTP_11222018_0_1um_scaffold_423_13
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9992..10288
DNA (297bp) protein (99aa)
Protein containing DUF497 n=1 Tax=mine drainage metagenome RepID=T1AWT7_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:GAO32531.1}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_423_14
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

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10275..10547
DNA (273bp) protein (91aa)
Putative uncharacterized protein n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1VWM2_9BURK
hypothetical protein
Tax=RBG_16_Betaproteobacteria_56_24_curated
RTP_11222018_0_1um_scaffold_423_15

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comp(10621..11334)
DNA (714bp) protein (238aa)
Putative autoinducer-binding transcriptional regulator LuxR family n=1 Tax=mine drainage metagenome RepID=E6QPQ1_9ZZZZ
Putative autoinducer-binding transcriptional regulator LuxR family {ECO:0000313|EMBL:CBI09222.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
AfeR; autoinducer-binding transcriptional regulator LuxR family
RTP_11222018_0_1um_scaffold_423_16

Not on your lists

11514..11924
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QVK6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI11279.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_423_17

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12014..12568
DNA (555bp) protein (185aa)
Autoinducer synthesis protein solI n=1 Tax=mine drainage metagenome RepID=E6QPP9_9ZZZZ
Autoinducer synthesis protein solI {ECO:0000313|EMBL:CBI09220.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
autoinducer synthesis protein
RTP_11222018_0_1um_scaffold_423_18
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12744..13385
DNA (642bp) protein (214aa)
Putative glutathione-S-transferase n=1 Tax=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) RepID=Q7W9B3_BORPA
glutathione-S-transferase
Putative glutathione-S-transferase {ECO:0000313|EMBL:CAE37154.1}; TaxID=257311 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253).;"
RTP_11222018_0_1um_scaffold_423_19
Pseudomonas sp. FeS53a, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13497..15245
DNA (1749bp) protein (583aa)
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:KIV73270.1}; EC=6.2.1.3 {ECO:0000313|EMBL:KIV73270.1};; TaxID=1604022 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FeS53a.;"
Uncharacterized protein n=1 Tax=Pseudomonas alcaligenes OT 69 RepID=U3H7P7_PSEAC
putative acyl-CoA synthetase
RTP_11222018_0_1um_scaffold_423_20
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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15322..16299
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Bacillus massiliosenegalensis RepID=UPI0002E7F84E
Glyoxalase {ECO:0000313|EMBL:GAN78164.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
glyoxalase family protein
RTP_11222018_0_1um_scaffold_423_21
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16414..17277
DNA (864bp) protein (288aa)
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase {ECO:0000313|EMBL:CEL21781.1}; EC=2.5.1.- {ECO:0000313|EMBL:CEL21781.1};; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase (EC:4.1.2.13)
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI0003713934
RTP_11222018_0_1um_scaffold_423_22
Photorhabdus temperata, Photorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17258..17953
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Pseudomonas alcaligenes OT 69 RepID=U3H555_PSEAC
Methyltransferase family protein {ECO:0000313|EMBL:ETS29245.1}; TaxID=1004151 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Photorhabdus.;" source="Photorhabdus temperata subsp. khanii NC19.;"
methyltransferase small
RTP_11222018_0_1um_scaffold_423_23
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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18225..19310
DNA (1086bp) protein (362aa)
O-6-methylguanine DNA methyltransferase (EC:2.1.1.63)
Regulatory protein ada n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EMC7_9CHLR
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_11222018_0_1um_scaffold_423_24
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19307..20077
DNA (771bp) protein (257aa)
prolyl 4-hydroxylase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI0003779114
Uncharacterized protein {ECO:0000313|EMBL:EKS40207.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_423_25
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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20099..20752
DNA (654bp) protein (218aa)
Alkylated DNA repair protein AlkB n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZBA8_9BRAD
alkylated DNA repair protein AlkB
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_11222018_0_1um_scaffold_423_26
Streptomyces pluripotens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20767..21342
DNA (576bp) protein (192aa)
DNA-3-methyladenine glycosylase II (EC:3.2.2.21)
Base excision DNA repair protein, HhH-GPD family n=2 Tax=Ralstonia RepID=E2T035_9RALS
DNA-3-methyladenine glycosylase {ECO:0000313|EMBL:KIE32209.1}; TaxID=1355015 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces pluripotens.;"
RTP_11222018_0_1um_scaffold_423_27
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21532..22887
DNA (1356bp) protein (452aa)
3-dehydroquinate synthase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2FAE2
3,7-dideoxy-D-threo-hepto-2, 6-diulosonate synthase {ECO:0000313|EMBL:GAE86733.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
3-dehydroquinate synthase
RTP_11222018_0_1um_scaffold_423_28
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23039..24709
DNA (1671bp) protein (557aa)
Uncharacterized protein n=1 Tax=Pseudomonas alcaligenes OT 69 RepID=U3H3Q1_PSEAC
Uncharacterized protein {ECO:0000313|EMBL:EQM66827.1}; TaxID=1333854 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes OT 69.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_423_29
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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25007..25702
DNA (696bp) protein (232aa)
Endonuclease DDE n=2 Tax=Ralstonia pickettii DTP0602 RepID=U3QZG6_RALPI
ISBmu8 transposase
ISBmu8 transposase {ECO:0000313|EMBL:BAP89095.1}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
RTP_11222018_0_1um_scaffold_423_30

Not on your lists

25699..26079
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DIN3_9BACT
ISBmu8 transposase
Uncharacterized protein {ECO:0000313|EMBL:EKD97231.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying items 1-30 of 51 in total

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