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RTP_11222018_0_1um_scaffold_425

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_425_1

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comp(2..2314)
DNA (2313bp) protein (771aa)
DNA polymerase I (POL I) {ECO:0000313|EMBL:CBI09652.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CBI09652.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
DNA polymerase I (EC:2.7.7.7)
DNA polymerase I (POL I) n=1 Tax=mine drainage metagenome RepID=E6QQY1_9ZZZZ
RTP_11222018_0_1um_scaffold_425_2

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2325..3053
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QQY2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09653.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_425_3
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3117..3446
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBJ7_NITMU
hypothetical protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
RTP_11222018_0_1um_scaffold_425_4

Not on your lists

3496..4461
DNA (966bp) protein (322aa)
Homoserine kinase (HSK) (HK) {ECO:0000313|EMBL:CBI09655.1}; EC=2.7.1.39 {ECO:0000313|EMBL:CBI09655.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
homoserine kinase (EC:2.7.1.39)
Homoserine kinase (HSK) (HK) n=1 Tax=mine drainage metagenome RepID=E6QQY4_9ZZZZ
RTP_11222018_0_1um_scaffold_425_5

Not on your lists

4458..5192
DNA (735bp) protein (245aa)
Putative transmembrane protein n=1 Tax=mine drainage metagenome RepID=E6QQY5_9ZZZZ
Putative transmembrane protein {ECO:0000313|EMBL:CBI09656.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_425_6
unknown

Not on your lists

comp(5237..5563)
DNA (327bp) protein (109aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_425_7
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5660..7756
DNA (2097bp) protein (699aa)
CheA signal transduction histidine kinase n=1 Tax=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) RepID=C6WXT9_METML
CheA signal transduction histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_11222018_0_1um_scaffold_425_8
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7768..8139
DNA (372bp) protein (124aa)
Response regulator receiver protein n=1 Tax=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) RepID=C6WXU0_METML
Response regulator receiver {ECO:0000313|EMBL:EYR66347.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
response regulator receiver protein
RTP_11222018_0_1um_scaffold_425_9
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8141..8608
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) RepID=C6WXU1_METML
Uncharacterized protein {ECO:0000313|EMBL:EYR66348.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_425_10
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8622..9821)
DNA (1200bp) protein (400aa)
Major facilitator superfamily transporter n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D6W4_BRAJP
MFS transporter
Tax=GWC2_Geobacteraceae_53_11_curated
RTP_11222018_0_1um_scaffold_425_11
unknown

Not on your lists

9884..10171
DNA (288bp) protein (96aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_425_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10220..10594)
DNA (375bp) protein (125aa)
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 id=12493275 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rplS; 50S ribosomal protein L19
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_425_13
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10690..11448)
DNA (759bp) protein (253aa)
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Methylovorus sp. (strain SIP3-4) RepID=C6XA88_METSD
RTP_11222018_0_1um_scaffold_425_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11448..11927)
DNA (480bp) protein (160aa)
Ribosome maturation factor RimM n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RIMM_THIDA
16S rRNA-processing protein RimM
Ribosome maturation factor RimM {ECO:0000255|HAMAP-Rule:MF_00014}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_11222018_0_1um_scaffold_425_15
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11938..12192)
DNA (255bp) protein (85aa)
30S ribosomal protein S16 n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UBN8_ADVKW
SSU ribosomal protein S16p
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
RTP_11222018_0_1um_scaffold_425_16
R_Methylotenera_45_14, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12362..13162
DNA (801bp) protein (267aa)
Methionine aminopeptidase (MAP) (Peptidase M) n=1 Tax=mine drainage metagenome RepID=E6QRA2_9ZZZZ
methionine aminopeptidase
Tax=RIFCSPLOWO2_02_FULL_Methylotenera_45_14_curated
RTP_11222018_0_1um_scaffold_425_17

Not on your lists

13107..15725
DNA (2619bp) protein (873aa)
(Protein-PII) uridylyltransferase (PII uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) {ECO:0000313|EMBL:CBI09775.1}; EC=2.7.7.59 {ECO:0000313|EMBL:CBI09775.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
(Protein-PII) uridylyltransferase (PII uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) n=1 Tax=mine drainage metagenome RepID=E6QRA3_9ZZZZ
PII uridylyl-transferase
RTP_11222018_0_1um_scaffold_425_18

Not on your lists

comp(15722..16624)
DNA (903bp) protein (301aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:CBI09783.1}; EC=2.7.7.9 {ECO:0000313|EMBL:CBI09783.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
UTP--glucose-1-phosphate uridylyltransferase (EC:2.7.7.9)
UTP--glucose-1-phosphate uridylyltransferase n=1 Tax=mine drainage metagenome RepID=E6QRB1_9ZZZZ
RTP_11222018_0_1um_scaffold_425_19
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16636..18651)
DNA (2016bp) protein (672aa)
ligA; DNA ligase (EC:6.5.1.2)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
DNA ligase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B4E4_9PROT
RTP_11222018_0_1um_scaffold_425_20

Not on your lists

comp(18663..19763)
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QRB3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09785.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_425_21

Not on your lists

comp(19760..20101)
DNA (342bp) protein (114aa)
Cell division protein ftsB n=1 Tax=mine drainage metagenome RepID=E6QRB4_9ZZZZ
Cell division protein ftsB {ECO:0000313|EMBL:CBI09786.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
cell division protein FtsB
RTP_11222018_0_1um_scaffold_425_22

Not on your lists

comp(20123..21406)
DNA (1284bp) protein (428aa)
eno; phosphopyruvate hydratase (EC:4.2.1.11); K01689 enolase [EC:4.2.1.11] id=12493733 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Enolase (2-phosphoglycerate dehydratase) (2-phospho-D-glycerate hydro-lyase) {ECO:0000313|EMBL:CBI09787.1}; EC=4.2.1.11 {ECO:0000313|EMBL:CBI09787.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
eno; phosphopyruvate hydratase (EC:4.2.1.11)
RTP_11222018_0_1um_scaffold_425_23

Not on your lists

comp(21443..22282)
DNA (840bp) protein (280aa)
2-dehydro-3-deoxyphosphooctonate aldolase (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) {ECO:0000313|EMBL:CBI09788.1}; EC=2.5.1.55 {ECO:0000313|EMBL:CBI09788.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
2-dehydro-3-deoxyphosphooctonate aldolase (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) n=1 Tax=mine drainage metagenome RepID=E6QRB6_9ZZZZ
RTP_11222018_0_1um_scaffold_425_24

Not on your lists

comp(22279..23910)
DNA (1632bp) protein (544aa)
CTP synthase (UTP--ammonia ligase) (CTP synthetase) {ECO:0000313|EMBL:CBI09789.1}; EC=6.3.4.2 {ECO:0000313|EMBL:CBI09789.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthase (UTP--ammonia ligase) (CTP synthetase) n=1 Tax=mine drainage metagenome RepID=E6QRB7_9ZZZZ
RTP_11222018_0_1um_scaffold_425_25
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24103..24564)
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00037AA379
regulatory protein RecX
Tax=GWA2_Gallionellales_60_18_curated
RTP_11222018_0_1um_scaffold_425_26

Not on your lists


comp(24605..25642)
DNA (1038bp) protein (346aa)
recA; recombinase A (EC:3.6.3.8)
Protein recA (Recombinase A) n=1 Tax=mine drainage metagenome RepID=E6QQU9_9ZZZZ
Protein recA (Recombinase A) {ECO:0000313|EMBL:CBI09620.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RTP_11222018_0_1um_scaffold_425_27
CG_Micra_04, Micraarchaeota, Archaea

Not on your lists

26849..27376
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QQG0_9ZZZZ
Tax=CG_Micra_04
RTP_11222018_0_1um_scaffold_425_28
unknown

Not on your lists

comp(27773..28255)
DNA (483bp) protein (161aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_425_29
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28391..28576)
DNA (186bp) protein (62aa)
Tax=RBG_16_Betaproteobacteria_56_24_curated
RTP_11222018_0_1um_scaffold_425_30

Not on your lists

comp(28573..28863)
DNA (291bp) protein (97aa)
CRISPR-associated protein Cas2 n=1 Tax=mine drainage metagenome RepID=E6QQF4_9ZZZZ
CRISPR-associated protein Cas2 {ECO:0000313|EMBL:CBI09475.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
Displaying items 1-30 of 32 in total

View Taxonomy