ggKbase home page

RTP_11222018_0_1um_scaffold_805

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_805_1
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..2498)
DNA (2496bp) protein (832aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAG9_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN35840.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_11222018_0_1um_scaffold_805_2
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2523..3077)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI00037563A7
Uncharacterized protein {ECO:0000313|EMBL:KFN44863.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
response regulator receiver
RTP_11222018_0_1um_scaffold_805_3
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3144..3344)
DNA (201bp) protein (67aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI000376FB6A
putative uncharacterized protein
Uncharacterized protein {ECO:0000313|EMBL:CDG84808.1}; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
RTP_11222018_0_1um_scaffold_805_4
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3473..4315)
DNA (843bp) protein (281aa)
ion transporter n=1 Tax=Janthinobacterium lividum RepID=UPI00028A2C75
Potassium voltage-gated channel subfamily KQT potassium channel {ECO:0000313|EMBL:EZP41839.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
ion transport family protein
RTP_11222018_0_1um_scaffold_805_5
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4412..5182
DNA (771bp) protein (257aa)
hypothetical protein id=12498664 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_11222018_0_1um_scaffold_805_6
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5182..5775
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B6Y4_9PROT
Methylase {ECO:0000313|EMBL:GAO37058.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_805_7
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5835..6968)
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AN40_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAO37060.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_805_8
Methylophilaceae bacterium 11, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7062..8102
DNA (1041bp) protein (347aa)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013344}; Short=NN:DBI PRT {ECO:0000256|HAMAP-Rule:MF_00230};; EC=2.4.2.21 {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013328};; N(1)-alpha-phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230}; TaxID=1101195 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium 11.;"
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21)
hypothetical protein n=1 Tax=Methylotenera sp. 1P/1 RepID=UPI000361390B
RTP_11222018_0_1um_scaffold_805_9
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8102..8851
DNA (750bp) protein (250aa)
cobS; cobalamin synthase (EC:2.7.8.26)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
Cobalamin synthase n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47JS3_DECAR
RTP_11222018_0_1um_scaffold_805_10
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8848..9366
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037BDD51
Alpha-ribazole phosphatase {ECO:0000313|EMBL:EIJ42421.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
phosphoglycerate mutase
RTP_11222018_0_1um_scaffold_805_11
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9446..9964)
DNA (519bp) protein (173aa)
Adenosylcobinamidekinase/adenosylcobinamide-phosphate guanylyltransferase {ECO:0000313|EMBL:BAQ41106.1}; EC=2.7.1.156 {ECO:0000313|EMBL:BAQ41106.1};; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
Adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase n=4 Tax=Pseudomonas aeruginosa RepID=K1CRB6_PSEAI
cobU; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
RTP_11222018_0_1um_scaffold_805_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9946..11439)
DNA (1494bp) protein (498aa)
cobyric acid synthase (EC:6.3.5.10)
Cobyric acid synthase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFE3_THIDA
Cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028, ECO:0000256|SAAS:SAAS00231811}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_11222018_0_1um_scaffold_805_13
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11485..11853)
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI000382BA70
putative uncharacterized protein
Tax=BJP_08E140C01_Dechloromonas_61_78
RTP_11222018_0_1um_scaffold_805_14
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11850..12140)
DNA (291bp) protein (97aa)
DNA polymerase beta-like domain n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82VK7_NITEU
DNA polymerase beta-like protein
DNA polymerase beta-like domain {ECO:0000313|EMBL:CAD84986.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
RTP_11222018_0_1um_scaffold_805_15
uncultured Thiohalocapsa sp. PB-PSB1, Thiohalocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12316..13293)
DNA (978bp) protein (326aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4JLC1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ESQ16581.1}; Flags: Fragment;; TaxID=1385625 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiohalocapsa; environmental samples.;" source="uncultured Thiohalocapsa sp. PB-PSB1.;"
L-threonine-O-3-phosphate decarboxylase
RTP_11222018_0_1um_scaffold_805_16
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13286..14200)
DNA (915bp) protein (305aa)
cobD2; cobalamin biosynthesis protein CobD (EC:2.6.1.-)
cobalamin biosynthesis protein CobD n=1 Tax=Pseudomonas amygdali RepID=UPI0002D592A2
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
RTP_11222018_0_1um_scaffold_805_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14197..14850)
DNA (654bp) protein (218aa)
cob(II)yrinic acid a,c-diamide reductase (EC:1.16.8.1)
Nitroreductase-like protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFE0_THIDA
Nitroreductase-like protein {ECO:0000313|EMBL:AAZ98670.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_11222018_0_1um_scaffold_805_18
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14847..16145)
DNA (1299bp) protein (433aa)
Cobyrinate a,c-diamide synthase {ECO:0000256|HAMAP-Rule:MF_00027}; EC=6.3.5.11 {ECO:0000256|HAMAP-Rule:MF_00027};; Cobyrinic acid a,c-diamide synthetase {ECO:0000256|HAMAP-Rule:MF_00027}; TaxID=1454005 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
Cobyrinic acid A,C-diamide synthase n=1 Tax=Pseudomonas sp. GM49 RepID=J2S929_9PSED
cobyrinic acid a,c-diamide synthase
RTP_11222018_0_1um_scaffold_805_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16142..16762)
DNA (621bp) protein (207aa)
cob(I)yrinic acid a,c-diamide adenosyltransferase (EC:2.5.1.17)
ATP:corrinoid adenosyltransferase BtuR/CobO/CobP {ECO:0000313|EMBL:AAZ98671.1}; EC=2.5.1.17 {ECO:0000313|EMBL:AAZ98671.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
ATP:corrinoid adenosyltransferase BtuR/CobO/CobP n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFD9_THIDA
RTP_11222018_0_1um_scaffold_805_20
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16759..17319)
DNA (561bp) protein (187aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFD8_THIDA
hypothetical protein
Tax=CG_Hydro_01
RTP_11222018_0_1um_scaffold_805_21
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17373..17837)
DNA (465bp) protein (155aa)
Probable outer membrane receptor protein n=1 Tax=Laribacter hongkongensis (strain HLHK9) RepID=C1D6G6_LARHH
outer membrane receptor protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
Displaying 21 items

View Taxonomy