ggKbase home page

RTP_11222018_0_1um_scaffold_924

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_924_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31..495)
DNA (465bp) protein (155aa)
Bacterioferritin n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GKN7_NITSI
Bacterioferritin {ECO:0000256|RuleBase:RU000623, ECO:0000313|EMBL:KIO49285.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
bacterioferritin
RTP_11222018_0_1um_scaffold_924_2
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(505..723)
DNA (219bp) protein (73aa)
BFD domain protein (2Fe-2S)-binding domain protein n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GKA5_NITSI
(2Fe-2S)-binding protein {ECO:0000313|EMBL:AKH37118.1}; TaxID=44574 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
BFD domain-containing protein (2Fe-2S)-binding domain-containing protein
RTP_11222018_0_1um_scaffold_924_3
Methylomonas methanica, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(739..921)
DNA (183bp) protein (61aa)
Hemin uptake protein hemP n=1 Tax=Methylomonas methanica (strain MC09) RepID=G0A7A7_METMM
hemin uptake protein HemP
Hemin uptake protein hemP {ECO:0000313|EMBL:AEF99400.1}; TaxID=857087 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas methanica (strain MC09).;"
RTP_11222018_0_1um_scaffold_924_trna_2
unknown

Not on your lists

comp(1152..1225)
DNA (74bp)
transferRNA Asp
RTP_11222018_0_1um_scaffold_924_trna_1
unknown

Not on your lists

comp(1286..1358)
DNA (73bp)
transferRNA Glu
RTP_11222018_0_1um_scaffold_924_4

Not on your lists

comp(1375..1572)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QRX2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09994.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RTP_11222018_0_1um_scaffold_924_5
unknown

Not on your lists

comp(1664..2062)
DNA (399bp) protein (133aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_924_6
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2059..2451)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0E0W4_THIND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA34867.1}; TaxID=1255043 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
RTP_11222018_0_1um_scaffold_924_7
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2457..3371)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00035C8033
biotin/lipoate A/B protein ligase
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
RTP_11222018_0_1um_scaffold_924_8
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3446..3859)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GUC9_THISH
hypothetical protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
RTP_11222018_0_1um_scaffold_924_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3875..4681)
DNA (807bp) protein (269aa)
CcsA-related protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHP5_9PROT
CcsA-related protein {ECO:0000313|EMBL:CCU62022.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
cytochrome c assembly protein
RTP_11222018_0_1um_scaffold_924_10
Thauera sp. 27, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4762..6105
DNA (1344bp) protein (448aa)
signal recognition particle protein Srp54 n=1 Tax=Thiobacillus thioparus RepID=UPI00036FA614
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=305700 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
signal recognition particle protein
RTP_11222018_0_1um_scaffold_924_11
unknown

Not on your lists

6105..6404
DNA (300bp) protein (100aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_924_12
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6389..7225)
DNA (837bp) protein (279aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00817, ECO:0000256|SAAS:SAAS00037296}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00817, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00817}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00817}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00817}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
7-cyano-7-deazaguanine reductase n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002DE6B94
queF; 7-cyano-7-deazaguanine reductase
RTP_11222018_0_1um_scaffold_924_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7222..8169)
DNA (948bp) protein (316aa)
Glycine cleavage T-protein (Aminomethyl transferase) id=1338455 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
glycine cleavage system protein T
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_924_14
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8295..8552)
DNA (258bp) protein (86aa)
Uncharacterized protein n=2 Tax=Ralstonia solanacearum RepID=M4UDH9_RALSL
Uncharacterized protein {ECO:0000313|EMBL:KIF80841.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_924_15
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8807..10057
DNA (1251bp) protein (417aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
glyA; glycine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABG1_9PROT
RTP_11222018_0_1um_scaffold_924_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10054..10512
DNA (459bp) protein (153aa)
NrdR family transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI0003614265
ATP-cone domain-containing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_924_17
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10515..11606
DNA (1092bp) protein (364aa)
5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC:1.1.1.193 3.5.4.26); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] id=12496643 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26)
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_11222018_0_1um_scaffold_924_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11616..12623
DNA (1008bp) protein (336aa)
sodium/hydrogen exchanger n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D04BD
Ca2+/H+ antiporter
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_11222018_0_1um_scaffold_924_19
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12609..13937)
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Leeia oryzae RepID=UPI0003748481
Fis family transcriptional regulator
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_11222018_0_1um_scaffold_924_20
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13931..15538)
DNA (1608bp) protein (536aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ACV9_9PROT
integral membrane sensor signal transduction histidine kinase
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_11222018_0_1um_scaffold_924_21
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15535..15768)
DNA (234bp) protein (78aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47IB5_DECAR
Uncharacterized protein {ECO:0000313|EMBL:AAZ45416.1}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
hypothetical protein
RTP_11222018_0_1um_scaffold_924_22
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


16738..17049
DNA (312bp) protein (104aa)
50S ribosomal protein L21 n=1 Tax=Thauera terpenica 58Eu RepID=T0ARN2_9RHOO
50S ribosomal protein L21
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
RTP_11222018_0_1um_scaffold_924_23
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17063..17326
DNA (264bp) protein (88aa)
50S ribosomal protein L27 n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QM68_AZOSU
rpmA; 50S ribosomal protein L27
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539, ECO:0000313|EMBL:AJP48028.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
RTP_11222018_0_1um_scaffold_924_24
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17509..18267
DNA (759bp) protein (253aa)
GTPase Obg n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DMX7_METS0
obgE; GTPase ObgE
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
RTP_11222018_0_1um_scaffold_924_25
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18270..19391
DNA (1122bp) protein (374aa)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
proB; gamma-glutamyl kinase (EC:2.7.2.11)
Glutamate 5-kinase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AMB0_9PROT
RTP_11222018_0_1um_scaffold_924_26
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19400..19996)
DNA (597bp) protein (199aa)
Lytic transglycosylase catalytic n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QLN8_METS6
lytic transglycosylase catalytic subunit
Tax=BJP_S1_SUB10_Methylophilales_55_32
RTP_11222018_0_1um_scaffold_924_27
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(20029..21732)
DNA (1704bp) protein (568aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
proS; prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B5X2_9PROT
RTP_11222018_0_1um_scaffold_924_28
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21805..22584
DNA (780bp) protein (260aa)
Spermidine synthase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AMB4_9PROT
spermidine synthase
Spermidine synthase {ECO:0000313|EMBL:GAO37765.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
Displaying items 1-30 of 33 in total

View Taxonomy