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RTP_11222018_0_1um_scaffold_928

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_928_1
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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3..440
DNA (438bp) protein (146aa)
elongation factor Tu n=1 Tax=Methyloversatilis universalis RepID=UPI00037088F3
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
elongation factor Tu
RTP_11222018_0_1um_scaffold_928_trna_1
unknown

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504..576
DNA (73bp)
transferRNA Trp
RTP_11222018_0_1um_scaffold_928_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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629..979
DNA (351bp) protein (117aa)
Protein translocase subunit SecE n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SCC3_GALCS
Preprotein translocase subunit SecE
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
RTP_11222018_0_1um_scaffold_928_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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976..1509
DNA (534bp) protein (178aa)
Transcription termination/antitermination protein NusG n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GKZ7_NITSI
NusG antitermination factor
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
RTP_11222018_0_1um_scaffold_928_4
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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1604..2035
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Uliginosibacterium gangwonense RepID=UPI0003667FF6
50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
RTP_11222018_0_1um_scaffold_928_5
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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2036..2731
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B183_9PROT
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
rplA; 50S ribosomal protein L1
RTP_11222018_0_1um_scaffold_928_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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3009..3530
DNA (522bp) protein (174aa)
50S ribosomal protein L10 n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E10A9
rplJ; 50S ribosomal protein L10
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_928_7
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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3578..3949
DNA (372bp) protein (124aa)
50S ribosomal protein L7/L12 n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AIU1_9PROT
rplL; 50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
RTP_11222018_0_1um_scaffold_928_8
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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4070..8143
DNA (4074bp) protein (1358aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9P3_9PROT
RTP_11222018_0_1um_scaffold_928_9
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

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8201..12397
DNA (4197bp) protein (1399aa)
rpoC; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AF34_9PROT
Tax=CG_Beta_01
RTP_11222018_0_1um_scaffold_928_10
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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12554..12931
DNA (378bp) protein (126aa)
30S ribosomal protein S12 n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=RS12_NITEU
rpsL; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000255|HAMAP-Rule:MF_00403}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
RTP_11222018_0_1um_scaffold_928_11
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13015..13485
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Methylophilus methylotrophus RepID=UPI00035CF13C
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
30S ribosomal protein S7
RTP_11222018_0_1um_scaffold_928_12
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13533..15623
DNA (2091bp) protein (697aa)
Elongation factor G n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AIU5_9PROT
fusA; translation elongation factor 2 (EF-2/EF-G)
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_11222018_0_1um_scaffold_928_13
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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15648..15782
DNA (135bp) protein (45aa)
Elongation factor Tu 2 n=1 Tax=Acidovorax sp. (strain JS42) RepID=EFTU2_ACISJ
tufB; GTPase translation elongation factor TU
Putative translation elongation factor Tu {ECO:0000313|EMBL:EFV94344.1}; Flags: Fragment;; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
Displaying 14 items

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