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RTP_11222018_0_1um_scaffold_929

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_929_1

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1..261
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QUI6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10909.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_929_2

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comp(334..1509)
DNA (1176bp) protein (392aa)
Glycosyltransferase {ECO:0000313|EMBL:CBI10281.1}; EC=2.4.-.- {ECO:0000313|EMBL:CBI10281.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Glycosyltransferase n=1 Tax=mine drainage metagenome RepID=E6QSQ9_9ZZZZ
group 1 glycosyl transferase
RTP_11222018_0_1um_scaffold_929_3
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

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1639..2232
DNA (594bp) protein (198aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TLK3_RICCO
Putative uncharacterized protein {ECO:0000313|EMBL:EEF23260.1}; Flags: Fragment;; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus.;" source="Ricinus communis (Castor bean).;"
hypothetical protein
RTP_11222018_0_1um_scaffold_929_4

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2263..3063
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QQZ1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09662.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_929_5

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comp(3067..4080)
DNA (1014bp) protein (338aa)
Putative O-sialoglycoprotein endopeptidase {ECO:0000313|EMBL:CBI11602.1}; EC=3.4.24.57 {ECO:0000313|EMBL:CBI11602.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative DNA-binding/iron metalloprotein/AP endonuclease (EC:3.4.24.57)
Putative O-sialoglycoprotein endopeptidase n=1 Tax=mine drainage metagenome RepID=E6QWH9_9ZZZZ
RTP_11222018_0_1um_scaffold_929_6

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4218..4907
DNA (690bp) protein (230aa)
Phosphate regulon transcriptional regulatory protein phoB n=1 Tax=mine drainage metagenome RepID=E6QWH8_9ZZZZ
Phosphate regulon transcriptional regulatory protein phoB {ECO:0000313|EMBL:CBI11601.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
two component transcriptional regulator
RTP_11222018_0_1um_scaffold_929_7

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4922..6250
DNA (1329bp) protein (443aa)
PAS/PAC sensor signal transduction histidine kinase (EC:2.7.3.-)
Putative Phosphate regulon sensor protein phoR n=1 Tax=mine drainage metagenome RepID=E6QWH7_9ZZZZ
Putative Phosphate regulon sensor protein phoR {ECO:0000313|EMBL:CBI11600.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RTP_11222018_0_1um_scaffold_929_8
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6210..6623)
DNA (414bp) protein (138aa)
HIT family hydrolase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003789788
histidine triad (HIT) protein
Histidine triad (HIT) protein {ECO:0000313|EMBL:ABE50771.1}; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
RTP_11222018_0_1um_scaffold_929_9

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comp(6644..7249)
DNA (606bp) protein (202aa)
Recombination protein RecR n=1 Tax=mine drainage metagenome RepID=E6QWH5_9ZZZZ
Recombination protein RecR {ECO:0000313|EMBL:CBI11598.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
recR; recombination protein RecR
RTP_11222018_0_1um_scaffold_929_10
Burkholderia sacchari, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7257..7583)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000376E5D0
Nucleoid-associated protein NH14_11335 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=159450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sacchari.;"
DNA-binding protein, YbaB/EbfC family
RTP_11222018_0_1um_scaffold_929_11
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7588..9258)
DNA (1671bp) protein (557aa)
DNA-directed DNA polymerase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B3W5_9PROT
dnaX; DNA-directed DNA polymerase
DNA-directed DNA polymerase {ECO:0000313|EMBL:BAN35332.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_11222018_0_1um_scaffold_929_12

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9397..9609
DNA (213bp) protein (71aa)
30S ribosomal subunit protein S21 n=1 Tax=mine drainage metagenome RepID=E6QWH2_9ZZZZ
30S ribosomal subunit protein S21 {ECO:0000313|EMBL:CBI11595.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
30S ribosomal protein S21
RTP_11222018_0_1um_scaffold_929_13

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9632..10078
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QWH1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI11594.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_929_14

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10156..11862
DNA (1707bp) protein (569aa)
DNA primase {ECO:0000313|EMBL:CBI11592.1}; EC=2.7.7.- {ECO:0000313|EMBL:CBI11592.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
DNA primase n=1 Tax=mine drainage metagenome RepID=E6QWG9_9ZZZZ
DNA primase
RTP_11222018_0_1um_scaffold_929_15

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11989..13893
DNA (1905bp) protein (635aa)
RNA polymerase sigma factor rpoD (Sigma-70) n=1 Tax=mine drainage metagenome RepID=E6QWG8_9ZZZZ
RNA polymerase sigma factor rpoD (Sigma-70) {ECO:0000313|EMBL:CBI11591.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RNA polymerase sigma factor RpoD
RTP_11222018_0_1um_scaffold_929_trna_1
unknown

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13939..14012
DNA (74bp)
transferRNA Met
RTP_11222018_0_1um_scaffold_929_16

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14109..15770
DNA (1662bp) protein (554aa)
Putative ABC transporter, ATP-binding protein n=1 Tax=mine drainage metagenome RepID=E6QXG3_9ZZZZ
Putative ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CBI11937.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ABC transporter
RTP_11222018_0_1um_scaffold_929_17
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16111..16731
DNA (621bp) protein (207aa)
LemA family protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X6N9_THIK1
LemA family protein
LemA family protein {ECO:0000313|EMBL:ADG32036.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
RTP_11222018_0_1um_scaffold_929_18
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16738..17562
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PR00_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CDW94061.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
conserved hypothetical protein; putative exported protein
RTP_11222018_0_1um_scaffold_929_19
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17534..18067
DNA (534bp) protein (178aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X6P1_THIK1
Uncharacterized protein {ECO:0000313|EMBL:CDW94060.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
hypothetical protein
Displaying 20 items

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